iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006917

UUCD1 version

UUC-ArT-01161

Ensembl Protein ID

AT2G44900.2

UniProt Accession

O22161; ADLO1_ARATH

Genbank Protein ID

AAC31834.1; AEC10482.1; ANM62877.1

Protein Name

Protein ARABIDILLO 1; F-box only protein 5

Genbank Nucleotide ID

AC002388; CP002685; CP002685

Gene Name

FBX5; At2g44900; T13E15.9

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT2G44900	AT2G44900.2	AT2G44900.2

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 adaptor/Cullin RING/SCF/F-box	F-box	21052782; 20511490

Classification

Family	E-value	Score	Start	End
E3 adaptor/Cullin RING/SCF/F-box	0.16	12.9	47	90

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/SCF/F-box

   S: 103  ldrlpeeilveilklldkeellraarvcrrwqelasqkalwktv 146
           + +lp++ +++ ++ l+ ++  ++a++c++w++l  ++ lw ++
   Q: 47   WISLPYDTVLQLFTCLNYRDRASLASTCKTWRCLGASSCLWTSL 90
           6689****************************888879999765 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Promotes lateral root initiation and development, independently of auxin (IAA) and abscisis acid (ABA).

Protein Sequence
(Fasta)

MSRRVRRKLE EEKGKDKVVV LPSYPETSIS NEEDLVAPEL LHGFVDWISL PYDTVLQLFT 60
CLNYRDRASL ASTCKTWRCL GASSCLWTSL DLRPHKFDAS MAASLASRCV NLHYLRFRGV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCTCTATCAT ATTCGTATAT ATGAGCTGTG TTTTCATCAC ACGAAGCCCT CTTCTCTCTT 60
GTCTCTTCTC CTCTAAGCCC CGACCTGGAA TTTTCCAATT CCTTCATCAT CATCTTCTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR001810--F-box_dom
IPR032675--L_dom-like
IPR006553--Leu-rich_rpt_Cys-con_subtyp

PROSITE

PS50176--ARM_REPEAT

Pfam

PF00514--Arm

SMART

SM00185--ARM
SM00256--FBOX
SM00367--LRR_CC

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0008134--F:transcription factor binding
GO:0048527--P:lateral root development

KEGG

ath:AT2G44900

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000414	Aegilops tauschii	68.85	2.00e-175	608.00
IUUC-Atr-002711	Amborella trichopoda	68.19	0.00e+00	1160.00
IUUC-Aly-006252	Arabidopsis lyrata	96.24	0.00e+00	1746.00
IUUC-Bdi-014068	Brachypodium distachyon	65.69	0.00e+00	983.00
IUUC-Bol-015524	Brassica oleracea	81.55	0.00e+00	1467.00
IUUC-Bra-016626	Brassica rapa	82.51	0.00e+00	1493.00
IUUC-Cin-025796	Ciona intestinalis	25.86	3.00e-17	83.60
IUUC-Csv-025821	Ciona savignyi	26.48	3.00e-19	90.10
IUUC-Dor-030505	Dipodomys ordii	21.26	2.00e-09	56.20
IUUC-Dme-031688	Drosophila melanogaster	23.87	8.00e-15	75.10
IUUC-Gma-042966	Glycine max	75.62	0.00e+00	1263.00
IUUC-Hvu-047326	Hordeum vulgare	66.04	0.00e+00	899.00
IUUC-Lpe-051066	Leersia perrieri	59.85	0.00e+00	924.00
IUUC-Mtr-057820	Medicago truncatula	74.89	0.00e+00	1190.00
IUUC-Mac-065669	Musa acuminata	70.23	0.00e+00	1168.00
IUUC-Oba-075240	Oryza barthii	67.41	0.00e+00	901.00
IUUC-Obr-076479	Oryza brachyantha	72.98	0.00e+00	726.00
IUUC-Ogl-077859	Oryza glaberrima	63.92	0.00e+00	1013.00
IUUC-Ogu-078740	Oryza glumaepatula	65.78	0.00e+00	909.00
IUUC-Oin-079442	Oryza indica	75.13	0.00e+00	737.00
IUUC-Olo-080928	Oryza longistaminata	60.96	0.00e+00	793.00
IUUC-Ome-081689	Oryza meridionalis	64.13	0.00e+00	1010.00
IUUC-Oni-083118	Oryza nivara	61.99	0.00e+00	1004.00
IUUC-Opu-083603	Oryza punctata	64.31	0.00e+00	994.00
IUUC-Oru-085225	Oryza rufipogon	60.02	0.00e+00	997.00
IUUC-Osa-085817	Oryza sativa	72.91	0.00e+00	743.00
IUUC-Ppa-095537	Physcomitrella patens	64.59	0.00e+00	949.00
IUUC-Pop-099168	Populus trichocarpa	80.70	0.00e+00	1300.00
IUUC-Ppe-102089	Prunus persica	78.90	0.00e+00	1302.00
IUUC-Smo-109321	Selaginella moellendorffii	65.39	0.00e+00	1049.00
IUUC-Sit-110607	Setaria italica	64.47	0.00e+00	962.00
IUUC-Sly-111773	Solanum lycopersicum	72.75	0.00e+00	927.00
IUUC-Sbi-114140	Sorghum bicolor	64.63	0.00e+00	973.00
IUUC-Tca-121125	Theobroma cacao	79.34	0.00e+00	1306.00
IUUC-Tae-125154	Triticum aestivum	65.77	0.00e+00	993.00
IUUC-Tur-126716	Triticum urartu	66.96	0.00e+00	752.00
IUUC-Vvi-131526	Vitis vinifera	75.22	0.00e+00	1249.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence