• HOME
  • BROWSE
  • SEARCH
  • LINK
  • DOWNLOAD
  • USER GUIDE
  • Protein
  • Gene
  • Annotation
  • Classification
  • Domain Profile
  • Function
  • Protein Sequence
  • Nucleotide Sequence
  • Keyword
  • GO
  • Orthology
  • TOP

Tag Content
iUUCD ID IUUC-Bta-013525
Ensembl Protein ID ENSBTAP00000004398.5
UniProt Accession A2VDN6; SF3A1_BOVIN
Genbank Protein ID AAI33329.1
Protein Name Splicing factor 3A subunit 1
Genbank Nucleotide ID BC133328
Gene Name SF3A1
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSBTAG00000003390.5 ENSBTAT00000004398.5 ENSBTAP00000004398.5
Status Unreviewed
Classification
Family E-Value Score Start End
ULD/UDP/UBQ/UBQ_Other 7.30e-17 61.2 707 790
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   ULD/UDP/UBQ/UBQ_Other
   S: 1    vqvtvksldgs.eltlk....v...npsdtVaeLKekiekklgippeqqrLiykGkiLeddktLadyglkdgstihllekksgg 76
           ++v+v++++++ e++l+    v   + +d+V+++K ki++++g+p+ +q+L+y+G+ ++d ++La+y++ +g +ihl +k++gg
   Q: 707  IKVQVPNMQDKtEWKLNgqvlVftlPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKERGG 790
           6899*************996516658888**************************************************99875 PP
   
Organism Bos taurus
Functional Description
(View)

Functional Description


     Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex (By similarity).
 Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex (By similarity).
Protein Sequence
(Fasta)
MPAGPVQAVP PPPPAATEPK QPTEEEASSK EDSTPSKPVV GIIYPPPEVR NIVDKTASFV 60
ARNGPEFEAR IRQNEINNPK FNFLNPNDPY HAYYRHKVSE FKEGKAQEPS AAIPKVMQQQ 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Bta-013525|ULD,UBQ_Other|Bos taurus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GCTGCCGCCA TCTTGAGAGC TTGTCGTACT GTTGGTGCGG GGAAGGCGCT TTGACGCCGC 60
ACCGCTCACC TACACCGAGG CGGACTGGCA GCCCTGAGCG TCGCAGTCAT GCCGGCCGGA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Bta-013525|ULD,UBQ_Other|Bos taurus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0007--Acetylation
KW-0181--Complete proteome
KW-1017--Isopeptide bond
KW-0507--mRNA processing
KW-0508--mRNA splicing
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0747--Spliceosome
KW-0832--Ubl conjugation
Interpro

IPR022030--SF3A1
IPR000061--Surp
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
PROSITE

PS50128--SURP
PS50053--UBIQUITIN_2
Pfam

PF12230--PRP21_like_P
PF01805--Surp
PF00240--ubiquitin
SMART

SM00648--SWAP
SM00213--UBQ
Gene Ontology

GO:0071013--C:catalytic step 2 spliceosome
GO:0016607--C:nuclear speck
GO:0005686--C:U2 snRNP
GO:0071004--C:U2-type prespliceosome
GO:0005684--C:U2-type spliceosomal complex
GO:0003723--F:RNA binding
GO:0000389--P:mRNA 3'-splice site recognition
GO:0000398--P:mRNA splicing, via spliceosome
GO:0000381--P:regulation of alternative mRNA splicing, via spliceosome
KEGG bta:504381
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000319 Aegilops tauschii 35.90 2.00e-48 186.00
IUUC-Aml-002416 Ailuropoda melanoleuca 99.48 0.00e+00 1145.00
IUUC-Atr-003001 Amborella trichopoda 48.57 5.00e-65 242.00
IUUC-Apl-003584 Anas platyrhynchos 92.60 0.00e+00 949.00
IUUC-Aca-004690 Anolis carolinensis 86.08 0.00e+00 1026.00
IUUC-Aly-005487 Arabidopsis lyrata 44.81 1.00e-55 211.00
IUUC-Ath-007275 Arabidopsis thaliana 44.40 3.00e-57 216.00
IUUC-Acl-008320 Aspergillus clavatus 42.86 1.00e-47 184.00
IUUC-Afl-008707 Aspergillus flavus 45.70 4.00e-58 219.00
IUUC-Afu-008786 Aspergillus fumigatus 41.11 1.00e-46 181.00
IUUC-Ani-009307 Aspergillus nidulans 44.25 1.00e-52 201.00
IUUC-Ang-009761 Aspergillus niger 45.85 6.00e-57 214.00
IUUC-Aor-010067 Aspergillus oryzae 45.70 4.00e-58 219.00
IUUC-Ate-010515 Aspergillus terreus 46.03 4.00e-58 219.00
IUUC-Ame-011842 Astyanax mexicanus 79.28 0.00e+00 1008.00
IUUC-Bgr-012204 Blumeria graminis 35.25 2.00e-65 243.00
IUUC-Bci-013842 Botrytis cinerea 46.43 2.00e-50 193.00
IUUC-Bdi-014436 Brachypodium distachyon 36.59 6.00e-74 272.00
IUUC-Bol-015903 Brassica oleracea 43.65 5.00e-54 206.00
IUUC-Bra-017856 Brassica rapa 36.83 2.00e-55 210.00
IUUC-Cel-018261 Caenorhabditis elegans 50.34 6.00e-80 291.00
IUUC-Cja-018989 Callithrix jacchus 99.35 0.00e+00 1128.00
IUUC-Cfa-020629 Canis familiaris 99.48 0.00e+00 1135.00
IUUC-Cpo-021759 Cavia porcellus 99.48 0.00e+00 1127.00
IUUC-Cre-022603 Chlamydomonas reinhardtii 38.93 2.00e-22 100.00
IUUC-Csa-023750 Chlorocebus sabaeus 99.22 0.00e+00 1129.00
IUUC-Cho-024581 Choloepus hoffmanni 98.89 4.00e-124 438.00
IUUC-Cin-025640 Ciona intestinalis 57.47 5.00e-147 514.00
IUUC-Csv-025855 Ciona savignyi 55.74 4.00e-142 498.00
IUUC-Cgl-026573 Colletotrichum gloeosporioides 41.92 2.00e-45 176.00
IUUC-Cne-026952 Cryptococcus neoformans 41.25 5.00e-49 189.00
IUUC-Dre-028055 Danio rerio 81.14 0.00e+00 975.00
IUUC-Dno-029259 Dasypus novemcinctus 99.09 0.00e+00 1138.00
IUUC-Dor-031081 Dipodomys ordii 98.83 0.00e+00 1131.00
IUUC-Dse-031438 Dothistroma septosporum 39.45 1.00e-47 184.00
IUUC-Dme-031975 Drosophila melanogaster 60.00 1.00e-147 516.00
IUUC-Ete-033177 Echinops telfairi 96.26 0.00e+00 899.00
IUUC-Eca-033670 Equus caballus 99.74 0.00e+00 1144.00
IUUC-Eeu-035100 Erinaceus europaeus 93.57 0.00e+00 701.00
IUUC-Fca-036176 Felis catus 99.48 0.00e+00 1135.00
IUUC-Fal-036776 Ficedula albicollis 91.51 0.00e+00 936.00
IUUC-Fox-037706 Fusarium oxysporum 40.83 7.00e-49 188.00
IUUC-Fso-038313 Fusarium solani 42.39 6.00e-45 175.00
IUUC-Gmo-038887 Gadus morhua 79.62 0.00e+00 1001.00
IUUC-Ggr-039932 Gaeumannomyces graminis 38.02 1.00e-34 140.00
IUUC-Gga-041184 Gallus gallus 91.26 0.00e+00 924.00
IUUC-Gac-042118 Gasterosteus aculeatus 83.64 0.00e+00 988.00
IUUC-Gma-042726 Glycine max 39.53 4.00e-82 299.00
IUUC-Ggo-045641 Gorilla gorilla 96.21 0.00e+00 1115.00
IUUC-Hsa-045751 Homo sapiens 99.09 0.00e+00 1120.00
IUUC-Hvu-047702 Hordeum vulgare 32.84 2.00e-30 127.00
IUUC-Itr-047960 Ictidomys tridecemlineatus 99.48 0.00e+00 1142.00
IUUC-Kpa-049400 Komagataella pastoris 29.31 4.00e-31 129.00
IUUC-Lch-050152 Latimeria chalumnae 85.92 0.00e+00 920.00
IUUC-Lpe-051570 Leersia perrieri 45.78 8.00e-33 135.00
IUUC-Loc-051753 Lepisosteus oculatus 84.03 0.00e+00 1033.00
IUUC-Lma-053219 Leptosphaeria maculans 36.58 1.00e-34 140.00
IUUC-Laf-053643 Loxodonta africana 98.96 0.00e+00 1100.00
IUUC-Mcc-055091 Macaca mulatta 99.09 0.00e+00 1129.00
IUUC-Meu-056036 Macropus eugenii 86.96 0.00e+00 801.00
IUUC-Mor-057214 Magnaporthe oryzae 37.36 5.00e-35 142.00
IUUC-Mpo-057385 Magnaporthe poae 30.00 1.00e-12 67.00
IUUC-Mtr-057954 Medicago truncatula 38.26 1.00e-81 297.00
IUUC-Mla-059020 Melampsora laricipopulina 36.50 2.00e-49 190.00
IUUC-Mga-060176 Meleagris gallopavo 92.59 0.00e+00 952.00
IUUC-Mvi-060278 Microbotryum violaceum 37.80 2.00e-52 200.00
IUUC-Mmr-061602 Microcebus murinus 99.09 0.00e+00 1154.00
IUUC-Mdo-062047 Monodelphis domestica 97.27 0.00e+00 1068.00
IUUC-Mmu-063377 Mus musculus 96.91 0.00e+00 1126.00
IUUC-Mac-065644 Musa acuminata 46.52 2.00e-60 227.00
IUUC-Mpu-066047 Mustela putorius furo 99.35 0.00e+00 1145.00
IUUC-Mlu-067039 Myotis lucifugus 99.48 0.00e+00 1112.00
IUUC-Nfi-068434 Neosartorya fischeri 45.59 4.00e-53 202.00
IUUC-Ncr-068912 Neurospora crassa 39.41 2.00e-39 156.00
IUUC-Nle-069540 Nomascus leucogenys 99.22 0.00e+00 1129.00
IUUC-Opr-071157 Ochotona princeps 98.83 0.00e+00 1113.00
IUUC-Ont-072229 Oreochromis niloticus 84.11 0.00e+00 992.00
IUUC-Oan-073616 Ornithorhynchus anatinus 98.23 2.00e-31 128.00
IUUC-Ocu-074002 Oryctolagus cuniculus 99.48 0.00e+00 1138.00
IUUC-Oba-075659 Oryza barthii 33.73 1.00e-34 140.00
IUUC-Obr-076465 Oryza brachyantha 46.25 1.00e-33 138.00
IUUC-Ogl-077461 Oryza glaberrima 37.08 3.00e-53 203.00
IUUC-Ogu-078515 Oryza glumaepatula 38.28 4.00e-53 202.00
IUUC-Oin-080201 Oryza indica 46.88 2.00e-33 137.00
IUUC-Olo-080751 Oryza longistaminata 33.73 1.00e-34 141.00
IUUC-Ome-081201 Oryza meridionalis 36.50 1.00e-74 274.00
IUUC-Oni-082951 Oryza nivara 46.88 3.00e-33 136.00
IUUC-Opu-083560 Oryza punctata 35.07 8.00e-64 238.00
IUUC-Oru-084440 Oryza rufipogon 37.08 3.00e-53 203.00
IUUC-Osa-085699 Oryza sativa 37.08 3.00e-53 203.00
IUUC-Ola-086705 Oryzias latipes 79.47 0.00e+00 965.00
IUUC-Olu-087794 Ostreococcus lucimarinus 36.27 2.00e-62 233.00
IUUC-Oga-088896 Otolemur garnettii 99.22 0.00e+00 1132.00
IUUC-Oar-090155 Ovis aries 95.43 0.00e+00 1103.00
IUUC-Ptr-090754 Pan troglodytes 98.96 0.00e+00 1118.00
IUUC-Pan-092464 Papio anubis 99.22 0.00e+00 1129.00
IUUC-Psi-093166 Pelodiscus sinensis 92.94 0.00e+00 742.00
IUUC-Pma-094280 Petromyzon marinus 85.40 2.00e-127 449.00
IUUC-Pno-095106 Phaeosphaeria nodorum 37.32 5.00e-31 129.00
IUUC-Ppa-095510 Physcomitrella patens 47.62 8.00e-57 215.00
IUUC-Pfo-096212 Poecilia formosa 76.33 0.00e+00 809.00
IUUC-Pab-098482 Pongo abelii 99.22 0.00e+00 1129.00
IUUC-Pop-099479 Populus trichocarpa 44.37 4.00e-56 213.00
IUUC-Pca-100776 Procavia capensis 99.01 1.00e-78 287.00
IUUC-Ppe-101626 Prunus persica 36.75 5.00e-76 279.00
IUUC-Pva-102981 Pteropus vampyrus 98.52 0.00e+00 1068.00
IUUC-Pgr-103503 Puccinia graminis 33.51 7.00e-69 255.00
IUUC-Ptt-103994 Puccinia triticina 38.54 3.00e-46 180.00
IUUC-Pte-104226 Pyrenophora teres 35.40 4.00e-36 145.00
IUUC-Pyt-104732 Pyrenophora triticirepentis 36.24 6.00e-39 155.00
IUUC-Rno-105225 Rattus norvegicus 97.02 0.00e+00 1120.00
IUUC-Sce-106278 Saccharomyces cerevisiae 23.28 4.00e-11 61.60
IUUC-Sha-107353 Sarcophilus harrisii 94.90 0.00e+00 1011.00
IUUC-Sja-107876 Schizosaccharomyces japonicus 35.78 3.00e-61 229.00
IUUC-Spo-108266 Schizosaccharomyces pombe 41.58 2.00e-52 199.00
IUUC-Ssl-108518 Sclerotinia sclerotiorum 45.74 3.00e-54 206.00
IUUC-Smo-109675 Selaginella moellendorffii 43.93 2.00e-51 197.00
IUUC-Sit-110019 Setaria italica 45.28 7.00e-33 135.00
IUUC-Sly-111621 Solanum lycopersicum 45.65 3.00e-63 236.00
IUUC-Stu-112703 Solanum tuberosum 46.35 5.00e-64 239.00
IUUC-Sar-113166 Sorex araneus 95.98 0.00e+00 1050.00
IUUC-Sbi-114746 Sorghum bicolor 36.36 5.00e-52 199.00
IUUC-Sre-115196 Sporisorium reilianum 40.27 2.00e-50 194.00
IUUC-Ssc-115573 Sus scrofa 99.61 0.00e+00 1138.00
IUUC-Tgu-117284 Taeniopygia guttata 92.48 0.00e+00 944.00
IUUC-Tru-118236 Takifugu rubripes 78.41 0.00e+00 922.00
IUUC-Tsy-119219 Tarsius syrichta 96.48 0.00e+00 1019.00
IUUC-Tni-119929 Tetraodon nigroviridis 82.16 4.00e-101 362.00
IUUC-Tca-121156 Theobroma cacao 44.26 7.00e-61 228.00
IUUC-Tre-122179 Trichoderma reesei 42.24 1.00e-44 174.00
IUUC-Tvi-122326 Trichoderma virens 40.85 2.00e-47 183.00
IUUC-Tae-124313 Triticum aestivum 37.02 4.00e-70 259.00
IUUC-Tur-126352 Triticum urartu 35.49 1.00e-48 188.00
IUUC-Tme-126996 Tuber melanosporum 42.80 1.00e-51 197.00
IUUC-Tbe-127271 Tupaia belangeri 91.70 0.00e+00 990.00
IUUC-Ttr-128433 Tursiops truncatus 97.65 0.00e+00 1131.00
IUUC-Uma-129357 Ustilago maydis 30.69 1.00e-47 184.00
IUUC-Vda-130010 Verticillium dahliae 40.50 3.00e-42 166.00
IUUC-Vvi-131734 Vitis vinifera 46.64 5.00e-63 236.00
IUUC-Xtr-132013 Xenopus tropicalis 85.96 0.00e+00 1004.00
IUUC-Xma-134244 Xiphophorus maculatus 79.77 0.00e+00 938.00
IUUC-Yli-134579 Yarrowia lipolytica 35.52 3.00e-31 129.00
IUUC-Zma-135600 Zea mays 35.96 3.00e-51 196.00
Created Date 25-Jun-2017

https://dev.news.makassarkota.go.id/public/pgsoft-demo/ https://jdih.sumbawabaratkab.go.id/lato/pg-soft-demo/ https://dev.news.makassarkota.go.id/public/slot-gacor/ http://pbb.tanahbumbukab.go.id/-/slot-gacor/ slot gacor https://siakad.unipra.ac.id/sass/slot-gacor-x500/ http://kpm.dinus.ac.id/assets/images/berita/slot/
Copyright © 2004-2017.The CUCKOO Workgroup. All Rights Reserved