iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099910

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000337

Gene Name

POPTRDRAFT_752921; POPTR_0001s31710g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0001s31710	POPTR_0001s31710.1	POPTR_0001s31710.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	7.00e-09	37.2	136	178

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           C iCl++f   +++++lp C+H fh +C+ kw       s + +CP+Cr
   Q: 136  CVICLSEFtpGEHVRLLPkCNHGFHVKCIDKW------LSSHSSCPTCR 178
           ********88444*******************......**********8 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MSTSTSTTHQ LFQGFLGDFY SRRLLLHTPL YQSSNTATPP APGNTASSET YTSTDNSFDA 60
NVVMVLSVLL CALICSLGLN SIIRCALRCS NLVASESAAN PSTQAANTGV KRKALKTFPI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTGAGCATGT CTACTTCTAC TTCAACAACT CATCAACTCT TTCAAGGTTT TCTTGGGGAT 60
TTCTACTCAA GAAGACTGCT ATTACATACC CCTCTCTACC AATCATCAAA CACGGCAACT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0001s31710g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002440	Amborella trichopoda	44.98	1.00e-33	135.00
IUUC-Aly-006297	Arabidopsis lyrata	65.12	1.00e-63	235.00
IUUC-Ath-006920	Arabidopsis thaliana	62.50	3.00e-61	227.00
IUUC-Bdi-014146	Brachypodium distachyon	51.22	3.00e-47	180.00
IUUC-Gma-043621	Glycine max	63.64	4.00e-75	273.00
IUUC-Hvu-047571	Hordeum vulgare	50.00	2.00e-41	161.00
IUUC-Lpe-051348	Leersia perrieri	49.50	1.00e-42	164.00
IUUC-Mtr-058186	Medicago truncatula	65.31	6.00e-66	243.00
IUUC-Mac-065335	Musa acuminata	49.52	6.00e-48	183.00
IUUC-Oba-075992	Oryza barthii	51.11	5.00e-37	147.00
IUUC-Obr-076307	Oryza brachyantha	51.40	1.00e-37	148.00
IUUC-Ogl-077735	Oryza glaberrima	51.40	9.00e-37	145.00
IUUC-Ogu-078127	Oryza glumaepatula	50.84	4.00e-36	144.00
IUUC-Olo-080939	Oryza longistaminata	51.40	4.00e-37	147.00
IUUC-Ome-081946	Oryza meridionalis	51.11	4.00e-37	148.00
IUUC-Oni-083084	Oryza nivara	51.40	6.00e-37	147.00
IUUC-Opu-084141	Oryza punctata	51.18	2.00e-34	139.00
IUUC-Oru-084596	Oryza rufipogon	51.40	4.00e-37	147.00
IUUC-Osa-085865	Oryza sativa	51.11	3.00e-37	147.00
IUUC-Ppe-101930	Prunus persica	71.50	4.00e-79	286.00
IUUC-Sit-110398	Setaria italica	50.98	2.00e-42	164.00
IUUC-Sly-111257	Solanum lycopersicum	54.04	7.00e-50	189.00
IUUC-Stu-112198	Solanum tuberosum	55.32	4.00e-64	236.00
IUUC-Sbi-114701	Sorghum bicolor	49.25	3.00e-35	141.00
IUUC-Tca-120946	Theobroma cacao	72.32	2.00e-87	314.00
IUUC-Tae-123289	Triticum aestivum	49.51	6.00e-35	139.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence