iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh2_kg.8__1438__AT5G55390.1	fgenesh2_kg.8__1438__AT5G55390.1	fgenesh2_kg.8__1438__AT5G55390.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	8.30e-09	36.2	350	385

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 3    vClvCgeggedek...slveCekCrewfHpaClkls 35
            C vC++g+ +++   ++ +C++C + +H +Cl ++
   Q: 350  KCSVCENGEVKTDsnlQFAVCRRCPKSYHRKCLPRE 385
           6******9988877899***************9765 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MAFVDDDEEE DFSVPQSASN YYFEDDDKEP VSFARLPIQW SGKDKVDGSS LGFYLRGRSD 60
NGLLPLHKLV KAWRFDLSNF RPEVSVLTKD NIWIKLEEPR KSYGELIRTV FVTLHSIQFL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGTTCG TTGACGATGA TGAAGAGGAA GACTTCTCTG TTCCTCAATC AGCTTCGAAT 60
TATTATTTCG AAGATGACGA TAAAGAGCCT GTTTCGTTTG CTCGTCTCCC AATTCAATGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR029063--SAM-dependent_MTases
IPR001965--Znf_PHD
IPR013083--Znf_RING/FYVE/PHD

SMART

SM00249--PHD

Gene Ontology

GO:0005634--C:nucleus
GO:0043565--F:sequence-specific DNA binding
GO:0003700--F:transcription factor activity, sequence-specific DNA binding
GO:0008270--F:zinc ion binding
GO:0050832--P:defense response to fungus
GO:0070829--P:heterochromatin maintenance
GO:0090436--P:leaf pavement cell development
GO:0031937--P:positive regulation of chromatin silencing
GO:0009911--P:positive regulation of flower development
GO:0061087--P:positive regulation of histone H3-K27 methylation
GO:1900111--P:positive regulation of histone H3-K9 dimethylation
GO:0044030--P:regulation of DNA methylation
GO:2000024--P:regulation of leaf development
GO:1900363--P:regulation of mRNA polyadenylation
GO:0007165--P:signal transduction
GO:0010228--P:vegetative to reproductive phase transition of meristem

KEGG

aly:ARALYDRAFT_495622

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000732	Aegilops tauschii	28.76	2.00e-25	108.00
IUUC-Atr-002482	Amborella trichopoda	49.22	0.00e+00	687.00
IUUC-Ath-007426	Arabidopsis thaliana	92.14	0.00e+00	2271.00
IUUC-Bdi-014781	Brachypodium distachyon	49.10	9.00e-59	221.00
IUUC-Bol-016001	Brassica oleracea	72.73	0.00e+00	1813.00
IUUC-Bra-017864	Brassica rapa	72.60	0.00e+00	1786.00
IUUC-Cho-024405	Choloepus hoffmanni	29.77	4.00e-10	59.70
IUUC-Csv-026298	Ciona savignyi	28.07	1.00e-10	60.50
IUUC-Dno-030020	Dasypus novemcinctus	31.65	4.00e-13	70.10
IUUC-Gga-040881	Gallus gallus	29.75	5.00e-16	80.90
IUUC-Gma-044054	Glycine max	48.00	0.00e+00	789.00
IUUC-Lpe-051201	Leersia perrieri	44.75	7.00e-51	194.00
IUUC-Loc-052581	Lepisosteus oculatus	30.82	8.00e-16	76.60
IUUC-Opr-070842	Ochotona princeps	30.97	3.00e-13	72.00
IUUC-Oan-072724	Ornithorhynchus anatinus	31.68	7.00e-14	72.00
IUUC-Oba-075813	Oryza barthii	41.03	0.00e+00	656.00
IUUC-Obr-076122	Oryza brachyantha	45.61	6.00e-36	143.00
IUUC-Ogl-077641	Oryza glaberrima	48.18	3.00e-55	207.00
IUUC-Ogu-078898	Oryza glumaepatula	48.64	3.00e-55	208.00
IUUC-Oin-079557	Oryza indica	48.64	3.00e-55	207.00
IUUC-Olo-080581	Oryza longistaminata	36.44	2.00e-36	145.00
IUUC-Ome-081770	Oryza meridionalis	48.64	3.00e-55	208.00
IUUC-Oni-082657	Oryza nivara	48.64	2.00e-55	208.00
IUUC-Opu-083479	Oryza punctata	39.39	3.00e-40	158.00
IUUC-Oru-084464	Oryza rufipogon	48.64	4.00e-55	207.00
IUUC-Osa-085353	Oryza sativa	48.64	2.00e-55	208.00
IUUC-Sly-111281	Solanum lycopersicum	45.23	2.00e-151	528.00
IUUC-Stu-112457	Solanum tuberosum	58.33	2.00e-52	197.00
IUUC-Sbi-114581	Sorghum bicolor	39.71	1.00e-34	139.00
IUUC-Tae-125914	Triticum aestivum	33.33	5.00e-30	123.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence