iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-006760

UUCD1 version

UUC-ArT-00555

Ensembl Protein ID

AT1G23030.1

UniProt Accession

Q8GUG9; O23121; Q56WV7; PUB11_ARATH

Genbank Protein ID

AAB72157.1; AEE30324.1; AAO00878.1; BAD94341.1

Protein Name

U-box domain-containing protein 11; Plant U-box protein 11; RING-type E3 ubiquitin transferase PUB11

Genbank Nucleotide ID

AF000657; CP002684; BT002518; AK221923

Gene Name

PUB11; At1g23030; F10G19.3

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G23030	AT1G23030.1	AT1G23030.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.40e-31	109.2	241	313

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           +p +flCp+slelM+dPv++++G+ty+r++I++w++ g+ tcP+t+q+l++ +l+Pn++lr+li++wc+e+++
   Q: 241  IPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLENFTLTPNYVLRSLISRWCAEHNI 313
           899*******************************************************************986 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as an E3 ubiquitin ligase.

Protein Sequence
(Fasta)

MAGGIVSPAS LLDLIADIVE IPLNTGMFKK DCADLTRRVC LLTHLLEEIR DSTPIDSAAS 60
SSSENDWWSD LVVGLQAAKR LLSTARFQAR DSSDGAAKRI SFQFQCVTWK LEKALSNLPY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGATTTGAA ATATACACTA AAAAAAAAAG TTGACAACAA CAAAAAAAGT GGACCAAGAC 60
GTAGGTCCTT AAAACGGTGC CGTAACAAGG ACCTCTCGCT TGACAAAATG GTCGCGTGAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity
GO:0051865--P:protein autoubiquitination
GO:0016567--P:protein ubiquitination
GO:0010200--P:response to chitin

KEGG

ath:AT1G23030

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005917	Arabidopsis lyrata	98.04	0.00e+00	1188.00
IUUC-Bol-015936	Brassica oleracea	89.74	0.00e+00	1081.00
IUUC-Bra-016825	Brassica rapa	89.92	0.00e+00	1080.00
IUUC-Itr-048039	Ictidomys tridecemlineatus	26.34	3.00e-11	64.30
IUUC-Lpe-051513	Leersia perrieri	50.80	7.00e-159	553.00
IUUC-Oba-075045	Oryza barthii	49.44	8.00e-158	550.00
IUUC-Ogl-077779	Oryza glaberrima	50.40	3.00e-161	561.00
IUUC-Ogu-078572	Oryza glumaepatula	50.40	2.00e-161	561.00
IUUC-Oin-079487	Oryza indica	50.24	9.00e-161	559.00
IUUC-Olo-080348	Oryza longistaminata	50.60	2.00e-153	535.00
IUUC-Ome-081282	Oryza meridionalis	50.56	9.00e-161	559.00
IUUC-Oni-083061	Oryza nivara	50.24	9.00e-161	559.00
IUUC-Opu-083297	Oryza punctata	49.60	7.00e-151	526.00
IUUC-Oru-084442	Oryza rufipogon	50.40	3.00e-161	561.00
IUUC-Osa-085919	Oryza sativa	50.40	3.00e-161	561.00
IUUC-Pop-099907	Populus trichocarpa	61.93	0.00e+00	735.00
IUUC-Sit-110422	Setaria italica	51.55	1.00e-150	526.00
IUUC-Ssc-116061	Sus scrofa	25.76	8.00e-14	72.80
IUUC-Tae-125409	Triticum aestivum	53.26	3.00e-140	491.00
IUUC-Tur-126634	Triticum urartu	52.33	4.00e-135	474.00
IUUC-Tbe-127613	Tupaia belangeri	26.86	3.00e-08	53.90

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence