iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007055

UUCD1 version

UUC-ArT-00300

Ensembl Protein ID

AT1G23780.1

UniProt Accession

Q9ZUB8; B9DHN7; SKI22_ARATH

Genbank Protein ID

AAC98033.1; AEE30431.1; AAK83633.1; AAN31083.1; BAH20254.1

Protein Name

F-box protein SKIP22; SKP1-interacting partner 22

Genbank Nucleotide ID

AC005990; CP002684; AY049291; AY149929; AK317590

Gene Name

SKIP22; At1g23780; F5O8.33

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G23780	AT1G23780.1	AT1G23780.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 adaptor/Cullin RING/SCF/F-box	24.56	1.00e-08	59.30	IUUC-Hsa-046348

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Arabidopsis thaliana

Functional Description
(View)

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Protein Sequence
(Fasta)

MKLRLRHHET RETLKLELAD ADTLHDLRRR INPTVPSSVH LSLNRKDELI TPSPEDTLRS 60
LGLISGDLIY FSLEAGESSN WKLRDSETVA SQSESNQTSV HDSIGFAEVD VVPDQAKSNP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTCATGACTC TACTTTGTGA GGCGAAGAAG AAGATCGTAG TAGCCCGATA ATGAAGCTAC 60
GATTGAGACA TCACGAGACG AGAGAAACCC TAAAACTTGA ATTGGCCGAT GCAGACACTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0833--Ubl conjugation pathway

Interpro

IPR001810--F-box_dom

PROSITE

PS50181--FBOX

Pfam

PF12937--F-box-like

SMART

SM00256--FBOX

Gene Ontology

GO:0005634--C:nucleus
GO:0016567--P:protein ubiquitination

KEGG

ath:AT1G23780

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000290	Aegilops tauschii	31.51	4.00e-21	94.40
IUUC-Aml-001880	Ailuropoda melanoleuca	25.58	4.00e-08	52.00
IUUC-Atr-003003	Amborella trichopoda	35.76	7.00e-37	147.00
IUUC-Aca-004673	Anolis carolinensis	23.73	7.00e-08	51.60
IUUC-Bta-013386	Bos taurus	24.02	5.00e-08	52.00
IUUC-Bdi-014029	Brachypodium distachyon	28.68	2.00e-29	123.00
IUUC-Bol-015733	Brassica oleracea	63.17	3.00e-143	500.00
IUUC-Bra-016639	Brassica rapa	60.73	4.00e-126	444.00
IUUC-Cja-019301	Callithrix jacchus	27.23	7.00e-07	48.10
IUUC-Cfa-020474	Canis familiaris	26.28	2.00e-08	53.50
IUUC-Cpo-021958	Cavia porcellus	23.25	4.00e-07	48.90
IUUC-Csa-023971	Chlorocebus sabaeus	26.24	3.00e-07	49.30
IUUC-Cho-024677	Choloepus hoffmanni	26.29	2.00e-03	36.20
IUUC-Dno-029936	Dasypus novemcinctus	26.38	2.00e-04	40.40
IUUC-Dor-030716	Dipodomys ordii	26.67	6.00e-06	45.10
IUUC-Eca-034267	Equus caballus	24.67	4.70e-02	32.00
IUUC-Fca-035849	Felis catus	25.17	5.00e-09	55.50
IUUC-Gga-041190	Gallus gallus	22.94	2.00e-03	36.60
IUUC-Gma-044390	Glycine max	35.64	3.00e-50	191.00
IUUC-Ggo-044544	Gorilla gorilla	26.02	2.00e-05	43.50
IUUC-Hsa-046348	Homo sapiens	25.07	2.00e-05	43.50
IUUC-Itr-048160	Ictidomys tridecemlineatus	24.03	2.00e-05	42.70
IUUC-Lch-049937	Latimeria chalumnae	42.86	1.60e+00	26.90
IUUC-Lpe-051370	Leersia perrieri	27.90	3.00e-07	50.40
IUUC-Laf-053445	Loxodonta africana	23.53	1.00e-06	47.40
IUUC-Meu-055942	Macropus eugenii	30.64	9.00e-05	40.80
IUUC-Mtr-058475	Medicago truncatula	36.17	7.00e-54	204.00
IUUC-Mga-059897	Meleagris gallopavo	22.66	3.00e-03	35.80
IUUC-Mmr-061491	Microcebus murinus	27.06	5.00e-09	55.50
IUUC-Mdo-062549	Monodelphis domestica	25.18	1.00e-05	44.30
IUUC-Mmu-064312	Mus musculus	24.07	3.00e-07	49.30
IUUC-Mac-064591	Musa acuminata	32.17	3.00e-37	149.00
IUUC-Mlu-067947	Myotis lucifugus	25.06	2.00e-05	43.10
IUUC-Nle-069189	Nomascus leucogenys	25.54	2.00e-08	53.50
IUUC-Oan-073153	Ornithorhynchus anatinus	24.57	1.00e-04	40.80
IUUC-Ocu-074367	Oryctolagus cuniculus	28.57	1.00e-06	47.40
IUUC-Oba-075835	Oryza barthii	28.99	4.00e-34	138.00
IUUC-Obr-076729	Oryza brachyantha	29.72	1.00e-18	87.00
IUUC-Ome-081758	Oryza meridionalis	28.83	4.00e-33	135.00
IUUC-Opu-083777	Oryza punctata	29.05	1.00e-31	131.00
IUUC-Oru-084872	Oryza rufipogon	33.50	7.00e-21	95.50
IUUC-Osa-086001	Oryza sativa	33.50	8.00e-21	94.40
IUUC-Oga-088097	Otolemur garnettii	25.58	3.00e-06	46.20
IUUC-Oar-089633	Ovis aries	24.88	9.00e-07	47.80
IUUC-Ptr-091253	Pan troglodytes	26.32	1.00e-05	44.30
IUUC-Pan-092709	Papio anubis	25.95	1.00e-06	47.80
IUUC-Pma-094225	Petromyzon marinus	20.51	4.00e-05	42.40
IUUC-Ppa-095848	Physcomitrella patens	44.66	8.00e-15	74.70
IUUC-Pab-098160	Pongo abelii	25.42	3.00e-07	49.70
IUUC-Pop-099047	Populus trichocarpa	37.59	5.00e-66	244.00
IUUC-Ppe-101570	Prunus persica	32.48	6.00e-42	164.00
IUUC-Pva-103142	Pteropus vampyrus	25.64	4.00e-06	45.80
IUUC-Rno-105527	Rattus norvegicus	22.61	1.00e-06	47.00
IUUC-Sha-106501	Sarcophilus harrisii	23.95	6.90e-01	28.10
IUUC-Smo-108975	Selaginella moellendorffii	38.20	6.00e-17	79.30
IUUC-Sly-111386	Solanum lycopersicum	34.93	7.00e-52	197.00
IUUC-Stu-112530	Solanum tuberosum	34.35	1.00e-53	202.00
IUUC-Sar-113529	Sorex araneus	25.00	4.00e-07	48.90
IUUC-Sbi-114203	Sorghum bicolor	28.80	6.00e-31	127.00
IUUC-Ssc-116130	Sus scrofa	26.80	1.00e-08	53.90
IUUC-Tca-120980	Theobroma cacao	37.67	4.00e-59	221.00
IUUC-Tae-123742	Triticum aestivum	30.94	2.00e-19	90.10
IUUC-Tbe-127805	Tupaia belangeri	25.42	2.70e-01	29.60
IUUC-Ttr-129004	Tursiops truncatus	23.88	1.80e-02	33.50
IUUC-Vpa-130452	Vicugna pacos	25.69	4.00e-05	42.40
IUUC-Vvi-131289	Vitis vinifera	40.81	2.00e-55	209.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence