iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099253

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000352

Gene Name

POPTRDRAFT_256214; POPTR_0016s06820g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0016s06820	POPTR_0016s06820.1	POPTR_0016s06820.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	3.70e-08	34.9	102	144

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf...kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           C+iCl d+   +  +++lp CgH+fh++C+  w       + + +CP+Cr
   Q: 102  CSICLADYkstD-KLRLLPdCGHLFHLKCVDPW------LRLHPTCPVCR 144
           ********8844.499999**************......**********8 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MNSTTGYTGL LGSNNIGGFG YGIGVSIGIL LLITTITLAS YFCARNQQTS VPSQGRNSAD 60
QQLNLQSFVV EIGLDEATLK SYPTLLYSEA KLHKTDSTST CCSICLADYK STDKLRLLPD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAGAAAGAC GTTACTAATC ATATCAAGAT TAGAGTAAAT TGCAGGCTAT GAGAGCCGTT 60
GACCTTAAAA AAGCTAAGCA GCCATGATAT ATGACTGATA AAAGAAGAAA AACATATTGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0016s06820g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002979	Amborella trichopoda	56.67	3.00e-32	129.00
IUUC-Aly-006033	Arabidopsis lyrata	64.60	5.00e-40	156.00
IUUC-Ath-007108	Arabidopsis thaliana	64.60	1.00e-40	159.00
IUUC-Bdi-014078	Brachypodium distachyon	64.71	1.00e-27	115.00
IUUC-Bol-016119	Brassica oleracea	65.84	2.00e-40	157.00
IUUC-Bra-018069	Brassica rapa	62.24	2.00e-39	154.00
IUUC-Lpe-051365	Leersia perrieri	60.00	2.00e-25	108.00
IUUC-Oba-075041	Oryza barthii	52.78	1.00e-18	84.30
IUUC-Obr-076328	Oryza brachyantha	53.33	2.00e-19	88.60
IUUC-Ogl-077901	Oryza glaberrima	59.63	7.00e-24	102.00
IUUC-Oin-079366	Oryza indica	60.55	2.00e-24	104.00
IUUC-Ome-081376	Oryza meridionalis	60.42	1.00e-22	98.60
IUUC-Oni-082925	Oryza nivara	59.63	7.00e-24	102.00
IUUC-Opu-083948	Oryza punctata	50.72	1.00e-24	105.00
IUUC-Ppe-101919	Prunus persica	75.38	3.00e-47	179.00
IUUC-Sly-111057	Solanum lycopersicum	61.15	1.00e-36	145.00
IUUC-Stu-112602	Solanum tuberosum	62.96	2.00e-37	147.00
IUUC-Sbi-114367	Sorghum bicolor	58.82	3.00e-28	117.00
IUUC-Tca-121049	Theobroma cacao	75.76	3.00e-41	160.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence