iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Aly-006287

UUCD1 version

UUC-ArL-00771

Ensembl Protein ID

Al_scaffold_0008_1516

UniProt Accession

D7MR08; D7MR08_ARALL

Genbank Protein ID

EFH40370.1

Protein Name

Predicted protein

Genbank Nucleotide ID

GL348720

Gene Name

RIN3; ARALYDRAFT_684696

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Al_scaffold_0008_1516	Al_scaffold_0008_1516	Al_scaffold_0008_1516

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	1.20e-07	32.8	337	379
UBD/Alpha-Helix/CUE	1.10e-10	41.9	540	577

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           CaiC+e++ +  + l C+H+fh+ Cl  w  l +  +   +CP+Cr
   Q: 337  CAICREPMAK-AKRLHCNHLFHLGCLRSW--LDQGLNEVYSCPTCR 379
           ********99.888***************..777899999*****8 PP

UBD/Alpha-Helix/CUE

   S: 4    taleqLkeiFPnldysviqvvLeantgsleaavnnLLeg 42
            ++e+++e++P++++++i ++L ++t+s++ +vnnLL++
   Q: 540  AMAETVREVLPHVPDEIIFQDL-QRTNSVSVTVNNLLQM 577
           79********************.**************98 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MEIRYLPISL ATTALSFVGL QVWTELSLDR LRADGIITKN VSLGDSENTL ELLLSSYTTI 60
ALLASFVLNV YILLVLSLKT LFFGDLYAIE TRKLVERLAN YIIYKGTFLP LVVPPTVFQG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAGATAA GATATCTGCC CATTTCTTTG GCAACAACAG CTTTGAGCTT TGTGGGTTTA 60
CAAGTCTGGA CGGAGTTGTC TCTTGATAGA CTTAGAGCTG ATGGGATTAT CACCAAGAAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR003892--CUE
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51140--CUE
PS50089--ZF_RING_2

Pfam

PF02845--CUE
PF13639--zf-RING_2

SMART

SM00546--CUE
SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0008270--F:zinc ion binding

KEGG

aly:ARALYDRAFT_684696

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ath-007615	Arabidopsis thaliana	91.60	0.00e+00	1018.00
IUUC-Gma-043393	Glycine max	66.38	0.00e+00	802.00
IUUC-Lpe-051410	Leersia perrieri	51.74	6.00e-70	256.00
IUUC-Mtr-058643	Medicago truncatula	67.23	0.00e+00	816.00
IUUC-Mac-065495	Musa acuminata	55.00	1.00e-163	569.00
IUUC-Oba-074987	Oryza barthii	41.70	5.00e-90	324.00
IUUC-Obr-076485	Oryza brachyantha	52.51	7.00e-129	453.00
IUUC-Ogu-078481	Oryza glumaepatula	41.01	1.00e-94	340.00
IUUC-Oin-079556	Oryza indica	47.43	2.00e-127	448.00
IUUC-Olo-080588	Oryza longistaminata	56.06	3.00e-39	154.00
IUUC-Ome-081941	Oryza meridionalis	43.79	1.00e-102	366.00
IUUC-Oni-082488	Oryza nivara	40.70	3.00e-93	335.00
IUUC-Opu-083500	Oryza punctata	46.56	3.00e-105	375.00
IUUC-Oru-085082	Oryza rufipogon	41.70	5.00e-90	324.00
IUUC-Osa-085509	Oryza sativa	51.63	6.00e-134	470.00
IUUC-Sit-110161	Setaria italica	51.23	3.00e-140	491.00
IUUC-Sly-111850	Solanum lycopersicum	62.76	0.00e+00	684.00
IUUC-Tca-121783	Theobroma cacao	70.36	0.00e+00	825.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence