iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Sce-106227

Ensembl Protein ID

YER082C

UniProt Accession

P40055; D3DLY9; UTP7_YEAST

Genbank Protein ID

AAB64637.1; DAA07743.1

Protein Name

U3 small nucleolar RNA-associated protein 7; U three protein 7

Genbank Nucleotide ID

U18839; BK006939

Gene Name

UTP7; KRE31; YER082C

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
YER082C	YER082C	YER082C

Annotation

mRNA Expression
GEO	FFGED
Protein-protein Interaction
IID	iRefIndex	HINT	Mentha
Post-translational Modifications (PTMs)
CPLM
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.20e-06	25.4	275	311

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 4    dsvtclaf..sdtllvsGsdDgtikvWDlrtgvllks 38
           ++v+++a   s+ ++++ + D ++k+WD+r +++l+s
   Q: 275  GPVNSIAIdrSGYYMATTGADRSMKIWDIRNFKQLHS 311
           68******966699*****************999986 PP

Organism

Saccharomyces cerevisiae

Functional Description
(View)

Involved in nucleolar processing of pre-18S ribosomal RNA.

Protein Sequence
(Fasta)

MGHKKNGHRR QIKERENQNK FERSTYTNNA KNNHTQTKDK KLRAGLKKID EQYKKAVSSA 60
AATDYLLPES NGYLEPENEL EKTFKVQQSE IKSSVDVSTA NKALDLSLKE FGPYHIKYAK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGGTCACA AGAAGAACGG TCACAGACGC CAGATAAAAG AAAGAGAAAA CCAGAATAAA 60
TTTGAACGTT CCACATATAC TAATAATGCT AAAAATAATC ATACTCAAAC AAAGGATAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0687--Ribonucleoprotein
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR012952--BING4_C_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08149--BING4CT

SMART

SM01033--BING4CT
SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030688--C:preribosome, small subunit precursor
GO:0032040--C:small-subunit processome
GO:0000480--P:endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000447--P:endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472--P:endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0031167--P:rRNA methylation

KEGG

sce:YER082C

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000921	Aegilops tauschii	40.62	6.00e-95	339.00
IUUC-Atr-002528	Amborella trichopoda	40.43	1.00e-91	328.00
IUUC-Aly-005663	Arabidopsis lyrata	40.86	1.00e-97	348.00
IUUC-Ath-007405	Arabidopsis thaliana	41.03	9.00e-97	345.00
IUUC-Ang-009764	Aspergillus niger	46.14	3.00e-135	473.00
IUUC-Ame-011572	Astyanax mexicanus	45.52	9.00e-99	352.00
IUUC-Bdi-014459	Brachypodium distachyon	41.29	1.00e-99	354.00
IUUC-Bol-015169	Brassica oleracea	41.03	2.00e-94	338.00
IUUC-Bra-016837	Brassica rapa	39.49	3.00e-90	323.00
IUUC-Cel-018465	Caenorhabditis elegans	43.03	1.00e-98	351.00
IUUC-Cre-022704	Chlamydomonas reinhardtii	41.19	4.00e-111	393.00
IUUC-Cgl-026438	Colletotrichum gloeosporioides	46.89	7.00e-140	488.00
IUUC-Cne-026784	Cryptococcus neoformans	41.30	2.00e-86	311.00
IUUC-Dre-028533	Danio rerio	44.64	1.00e-91	328.00
IUUC-Dse-031280	Dothistroma septosporum	49.23	4.00e-142	496.00
IUUC-Eeu-034982	Erinaceus europaeus	44.41	7.00e-65	239.00
IUUC-Fox-037980	Fusarium oxysporum	47.37	1.00e-137	481.00
IUUC-Fso-038154	Fusarium solani	48.58	2.00e-139	487.00
IUUC-Gmo-039548	Gadus morhua	43.54	5.00e-92	329.00
IUUC-Ggr-039976	Gaeumannomyces graminis	47.10	3.00e-139	486.00
IUUC-Gac-042249	Gasterosteus aculeatus	42.67	5.00e-97	346.00
IUUC-Gma-043274	Glycine max	40.97	4.00e-94	336.00
IUUC-Hvu-047436	Hordeum vulgare	42.16	7.00e-70	255.00
IUUC-Kpa-049329	Komagataella pastoris	52.55	2.00e-148	516.00
IUUC-Lpe-051501	Leersia perrieri	40.50	7.00e-91	328.00
IUUC-Loc-051736	Lepisosteus oculatus	45.10	1.00e-94	338.00
IUUC-Meu-056419	Macropus eugenii	45.09	4.00e-89	319.00
IUUC-Mor-057146	Magnaporthe oryzae	47.01	1.00e-137	481.00
IUUC-Mpo-057512	Magnaporthe poae	45.11	5.00e-139	485.00
IUUC-Mtr-058139	Medicago truncatula	39.86	2.00e-96	344.00
IUUC-Mla-059028	Melampsora laricipopulina	42.56	4.00e-108	382.00
IUUC-Mvi-060533	Microbotryum violaceum	43.71	7.00e-111	392.00
IUUC-Mac-065643	Musa acuminata	41.22	7.00e-93	332.00
IUUC-Ont-071977	Oreochromis niloticus	44.36	9.00e-94	335.00
IUUC-Oba-075525	Oryza barthii	41.87	3.00e-96	343.00
IUUC-Obr-076468	Oryza brachyantha	41.26	3.00e-98	350.00
IUUC-Ogl-077395	Oryza glaberrima	41.87	3.00e-96	343.00
IUUC-Ogu-078730	Oryza glumaepatula	41.63	1.00e-95	341.00
IUUC-Oin-079797	Oryza indica	41.63	1.00e-95	341.00
IUUC-Olo-080539	Oryza longistaminata	41.39	2.00e-95	340.00
IUUC-Oni-082635	Oryza nivara	41.63	1.00e-95	341.00
IUUC-Opu-083733	Oryza punctata	41.22	2.00e-97	347.00
IUUC-Oru-084560	Oryza rufipogon	41.63	1.00e-95	341.00
IUUC-Osa-085463	Oryza sativa	41.63	1.00e-95	341.00
IUUC-Ola-086667	Oryzias latipes	45.17	5.00e-103	366.00
IUUC-Olu-087881	Ostreococcus lucimarinus	40.59	2.00e-99	353.00
IUUC-Pma-094742	Petromyzon marinus	42.17	4.00e-89	320.00
IUUC-Ppa-095230	Physcomitrella patens	45.80	3.00e-109	387.00
IUUC-Pop-099756	Populus trichocarpa	40.91	3.00e-93	333.00
IUUC-Ppe-101354	Prunus persica	39.63	7.00e-91	325.00
IUUC-Pte-104146	Pyrenophora teres	45.90	2.00e-123	434.00
IUUC-Pyt-104559	Pyrenophora triticirepentis	45.90	1.00e-125	441.00
IUUC-Sja-107925	Schizosaccharomyces japonicus	48.15	5.00e-140	489.00
IUUC-Spo-108359	Schizosaccharomyces pombe	45.12	3.00e-130	456.00
IUUC-Smo-108814	Selaginella moellendorffii	44.03	3.00e-103	367.00
IUUC-Sit-110158	Setaria italica	43.00	3.00e-92	330.00
IUUC-Sly-111569	Solanum lycopersicum	42.67	8.00e-92	328.00
IUUC-Stu-112403	Solanum tuberosum	42.93	6.00e-93	332.00
IUUC-Sbi-113839	Sorghum bicolor	43.25	1.00e-90	325.00
IUUC-Sre-115150	Sporisorium reilianum	38.68	2.00e-106	377.00
IUUC-Tru-118535	Takifugu rubripes	42.96	1.00e-98	351.00
IUUC-Tca-121165	Theobroma cacao	41.03	4.00e-93	333.00
IUUC-Tre-122114	Trichoderma reesei	45.97	1.00e-135	474.00
IUUC-Tvi-122437	Trichoderma virens	47.26	6.00e-134	468.00
IUUC-Tae-125625	Triticum aestivum	41.07	3.00e-96	343.00
IUUC-Tur-126078	Triticum urartu	40.89	6.00e-90	322.00
IUUC-Tme-127208	Tuber melanosporum	50.32	3.00e-135	473.00
IUUC-Ttr-129047	Tursiops truncatus	45.69	1.00e-103	368.00
IUUC-Uma-129320	Ustilago maydis	38.28	2.00e-107	381.00
IUUC-Vda-129926	Verticillium dahliae	45.71	8.00e-137	478.00
IUUC-Vvi-131643	Vitis vinifera	39.63	4.00e-87	313.00
IUUC-Yli-134674	Yarrowia lipolytica	48.28	6.00e-133	465.00
IUUC-Zma-135903	Zea mays	42.52	5.00e-87	313.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence