iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Tgu-117264

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

ABQF01014971

Gene Name

RNF4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSTGUG00000010518.1	ENSTGUT00000010958.1	ENSTGUP00000010845.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	7.30e-08	32.7	132	177

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf......kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C+iC++ +       +  +++ CgHvf+ +Cl       +s +++ +CP+Cr
   Q: 132  CPICMDVYseivqsGRLIVSTKCGHVFCSQCL------RDSLRNANSCPTCR 177
           ******9944444433255788*********9......4559*********8 PP

Organism

Taeniopygia guttata

Protein Sequence
(Fasta)

TQRKRRGGTV NSRQARKRSR LMASTAEMAS EAEPIELEES AGEEVVDLTC ESSDPVVVDL 60
THNDSVVVSK NQRQRRNLRL RSQRQADSCV LSSDDEDETR DNDVYVADKA SRELGPLEEE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACTCAACGGA AGCGCCGTGG AGGAACAGTT AATTCTAGGC AAGCTCGAAA AAGAAGCAGG 60
CTGATGGCTT CTACTGCTGA AATGGCTTCA GAAGCAGAGC CAATAGAACT TGAAGAAAGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005737--C:cytoplasm
GO:0016605--C:PML body
GO:0008270--F:zinc ion binding
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0090234--P:regulation of kinetochore assembly
GO:0090169--P:regulation of spindle assembly
GO:0046685--P:response to arsenic-containing substance

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000620	Aegilops tauschii	42.62	6.00e-12	63.90
IUUC-Aml-002206	Ailuropoda melanoleuca	72.11	1.00e-63	235.00
IUUC-Atr-002771	Amborella trichopoda	36.99	2.00e-11	62.40
IUUC-Apl-004120	Anas platyrhynchos	91.71	2.00e-89	320.00
IUUC-Aca-004236	Anolis carolinensis	73.02	2.00e-68	250.00
IUUC-Aly-005728	Arabidopsis lyrata	39.34	3.00e-10	57.80
IUUC-Ame-011555	Astyanax mexicanus	52.17	4.00e-39	153.00
IUUC-Bta-012913	Bos taurus	67.20	2.00e-65	241.00
IUUC-Bdi-014655	Brachypodium distachyon	45.90	5.00e-12	64.30
IUUC-Bol-016418	Brassica oleracea	42.62	2.00e-10	59.70
IUUC-Bra-017153	Brassica rapa	40.98	7.00e-11	59.70
IUUC-Cja-019151	Callithrix jacchus	68.95	6.00e-61	226.00
IUUC-Cfa-020868	Canis familiaris	70.98	1.00e-63	234.00
IUUC-Cpo-022249	Cavia porcellus	66.32	4.00e-58	216.00
IUUC-Csa-024125	Chlorocebus sabaeus	67.20	9.00e-60	222.00
IUUC-Cin-025749	Ciona intestinalis	44.26	4.00e-15	73.90
IUUC-Dre-028145	Danio rerio	47.13	1.00e-36	145.00
IUUC-Dno-029605	Dasypus novemcinctus	69.84	3.00e-67	246.00
IUUC-Dor-030898	Dipodomys ordii	70.74	2.00e-68	251.00
IUUC-Dme-032177	Drosophila melanogaster	52.54	3.00e-13	68.90
IUUC-Ete-032694	Echinops telfairi	68.25	2.00e-54	204.00
IUUC-Eca-033443	Equus caballus	71.96	4.00e-63	233.00
IUUC-Eeu-034603	Erinaceus europaeus	69.52	1.00e-39	154.00
IUUC-Fca-035507	Felis catus	73.02	6.00e-62	229.00
IUUC-Fal-037382	Ficedula albicollis	96.37	5.00e-86	309.00
IUUC-Gmo-038960	Gadus morhua	42.28	1.00e-21	94.70
IUUC-Gga-040493	Gallus gallus	88.95	1.00e-90	325.00
IUUC-Gac-042194	Gasterosteus aculeatus	51.01	9.00e-37	145.00
IUUC-Gma-042666	Glycine max	39.34	3.00e-09	54.70
IUUC-Ggo-044726	Gorilla gorilla	68.25	4.00e-60	223.00
IUUC-Hsa-046212	Homo sapiens	68.25	4.00e-60	223.00
IUUC-Hvu-047630	Hordeum vulgare	34.65	1.00e-12	66.20
IUUC-Itr-047892	Ictidomys tridecemlineatus	68.95	3.00e-61	226.00
IUUC-Lpe-050920	Leersia perrieri	40.98	1.00e-11	62.80
IUUC-Loc-051907	Lepisosteus oculatus	48.82	6.00e-37	146.00
IUUC-Lma-053133	Leptosphaeria maculans	38.98	6.00e-06	43.90
IUUC-Laf-054145	Loxodonta africana	70.53	1.00e-60	225.00
IUUC-Mcc-055689	Macaca mulatta	67.72	1.00e-59	221.00
IUUC-Meu-056654	Macropus eugenii	50.00	1.00e-43	168.00
IUUC-Mtr-058314	Medicago truncatula	43.55	2.00e-11	61.60
IUUC-Mga-059303	Meleagris gallopavo	88.60	3.00e-87	313.00
IUUC-Mmr-061355	Microcebus murinus	68.25	4.00e-60	223.00
IUUC-Mdo-062968	Monodelphis domestica	74.35	1.00e-74	271.00
IUUC-Mmu-064421	Mus musculus	67.37	4.00e-67	246.00
IUUC-Mac-064604	Musa acuminata	41.94	7.00e-12	63.50
IUUC-Mpu-066522	Mustela putorius furo	72.11	6.00e-64	236.00
IUUC-Mlu-067065	Myotis lucifugus	68.95	1.00e-60	225.00
IUUC-Nle-069198	Nomascus leucogenys	69.31	3.00e-61	226.00
IUUC-Opr-071141	Ochotona princeps	67.54	2.00e-65	241.00
IUUC-Oan-073341	Ornithorhynchus anatinus	70.34	2.00e-38	150.00
IUUC-Ocu-073787	Oryctolagus cuniculus	70.16	1.00e-69	254.00
IUUC-Oba-075460	Oryza barthii	40.00	2.00e-12	65.50
IUUC-Obr-076349	Oryza brachyantha	40.98	3.00e-11	61.60
IUUC-Ogl-077094	Oryza glaberrima	37.93	2.00e-13	68.60
IUUC-Ogu-078677	Oryza glumaepatula	40.00	2.00e-12	65.90
IUUC-Oin-079992	Oryza indica	37.93	2.00e-13	68.60
IUUC-Olo-080257	Oryza longistaminata	41.33	1.00e-12	66.20
IUUC-Ome-081943	Oryza meridionalis	37.93	3.00e-13	68.90
IUUC-Oni-082671	Oryza nivara	40.00	2.00e-12	65.50
IUUC-Opu-083644	Oryza punctata	42.47	2.00e-12	65.50
IUUC-Oru-084650	Oryza rufipogon	40.00	2.00e-12	65.50
IUUC-Osa-086110	Oryza sativa	37.93	2.00e-13	68.60
IUUC-Ola-086970	Oryzias latipes	46.15	1.00e-34	138.00
IUUC-Olu-087634	Ostreococcus lucimarinus	38.98	1.00e-10	58.90
IUUC-Oga-088242	Otolemur garnettii	69.47	9.00e-69	252.00
IUUC-Oar-089469	Ovis aries	70.53	2.00e-69	254.00
IUUC-Ptr-091254	Pan troglodytes	66.67	4.00e-57	213.00
IUUC-Pan-092919	Papio anubis	68.06	1.00e-60	225.00
IUUC-Psi-093929	Pelodiscus sinensis	83.51	5.00e-79	286.00
IUUC-Pma-094118	Petromyzon marinus	49.43	2.00e-23	99.00
IUUC-Ppa-095718	Physcomitrella patens	34.58	4.00e-13	67.80
IUUC-Pfo-097412	Poecilia formosa	50.31	5.00e-35	139.00
IUUC-Pab-098424	Pongo abelii	68.78	1.00e-60	224.00
IUUC-Pca-100463	Procavia capensis	66.43	9.00e-34	135.00
IUUC-Ppe-102052	Prunus persica	34.31	2.00e-10	58.90
IUUC-Pva-102594	Pteropus vampyrus	66.19	1.00e-41	161.00
IUUC-Rno-105460	Rattus norvegicus	68.23	2.00e-61	228.00
IUUC-Sha-107487	Sarcophilus harrisii	76.32	2.00e-76	277.00
IUUC-Smo-108908	Selaginella moellendorffii	38.71	1.00e-08	52.80
IUUC-Sit-109959	Setaria italica	37.70	2.00e-05	42.70
IUUC-Stu-112694	Solanum tuberosum	40.62	4.00e-10	57.40
IUUC-Sar-113601	Sorex araneus	69.15	4.00e-63	233.00
IUUC-Sbi-114398	Sorghum bicolor	40.98	5.00e-06	44.30
IUUC-Ssc-115911	Sus scrofa	70.90	4.00e-62	229.00
IUUC-Tru-117663	Takifugu rubripes	49.70	5.00e-39	152.00
IUUC-Tsy-118883	Tarsius syrichta	64.67	3.00e-47	179.00
IUUC-Tae-124035	Triticum aestivum	42.62	4.00e-12	64.30
IUUC-Tur-126408	Triticum urartu	42.62	5.00e-12	64.30
IUUC-Ttr-128950	Tursiops truncatus	57.98	9.00e-56	209.00
IUUC-Vvi-130833	Vitis vinifera	41.94	9.00e-11	60.10
IUUC-Xtr-132879	Xenopus tropicalis	62.58	4.00e-43	166.00
IUUC-Xma-133319	Xiphophorus maculatus	52.35	6.00e-34	135.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence