iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099435

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000345

Gene Name

POPTRDRAFT_833261; POPTR_0009s03960g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0009s03960	POPTR_0009s03960.1	POPTR_0009s03960.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	8.00e-09	37.0	213	254

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C iCle   +g  +++lpC H+fh++C+  w       +++ +CP+C+
   Q: 213  CTICLEQVNRGelVRSLPCLHQFHTNCIDPW------LRQQGTCPVCK 254
           ********88888******************......**********7 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MSFVFRGSRG DIESGFSGFI PERPAVRIHA ARPVNSNSLA FLVTVLLLFM ILNSHQMSPN 60
FLLWLVVGVF LMATSLRMYA TCQQLQAQAR AHAAAASGLM GHTELRLHMP PSIAFATRGR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCATTATCTC CTACATAGTT CTTAACTATA AGATCTCTCT ATTTTCCAAG GTTTCAACTT 60
TGTTCTCTGA TCTCTCTCTC TCTCTCTCTC TCTCTCTGTA TTAGTACTGT AAGTCCATCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0000209--P:protein polyubiquitination
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0009s03960g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000396	Aegilops tauschii	54.28	3.00e-63	234.00
IUUC-Atr-002651	Amborella trichopoda	71.84	4.00e-80	290.00
IUUC-Aca-005033	Anolis carolinensis	49.06	2.00e-12	66.20
IUUC-Aly-006305	Arabidopsis lyrata	79.27	4.00e-106	377.00
IUUC-Ath-007026	Arabidopsis thaliana	77.90	6.00e-104	369.00
IUUC-Bdi-015038	Brachypodium distachyon	65.61	5.00e-76	276.00
IUUC-Bol-015365	Brassica oleracea	78.41	2.00e-94	338.00
IUUC-Bra-017904	Brassica rapa	78.71	2.00e-95	341.00
IUUC-Cja-018949	Callithrix jacchus	33.00	2.00e-12	64.70
IUUC-Cpo-022010	Cavia porcellus	29.57	2.00e-13	70.50
IUUC-Csa-023712	Chlorocebus sabaeus	33.00	6.00e-14	72.00
IUUC-Csv-025869	Ciona savignyi	47.46	4.00e-14	72.40
IUUC-Cme-027166	Cyanidioschyzon merolae	31.89	9.00e-17	79.30
IUUC-Dre-028405	Danio rerio	56.00	1.00e-13	70.50
IUUC-Gma-043314	Glycine max	75.64	2.00e-98	351.00
IUUC-Ggo-045644	Gorilla gorilla	33.00	8.00e-14	72.00
IUUC-Hsa-045983	Homo sapiens	33.00	5.00e-14	72.80
IUUC-Mcc-054760	Macaca mulatta	33.00	5.00e-14	72.80
IUUC-Meu-056824	Macropus eugenii	41.67	6.00e-14	70.50
IUUC-Mac-065081	Musa acuminata	74.11	2.00e-90	324.00
IUUC-Nle-069493	Nomascus leucogenys	33.00	3.00e-14	73.20
IUUC-Oba-075903	Oryza barthii	61.96	7.00e-28	115.00
IUUC-Obr-076184	Oryza brachyantha	61.64	5.00e-67	247.00
IUUC-Ogl-076965	Oryza glaberrima	67.48	7.00e-75	273.00
IUUC-Oin-079430	Oryza indica	67.48	1.00e-74	272.00
IUUC-Olo-080739	Oryza longistaminata	67.48	1.00e-74	272.00
IUUC-Ome-081538	Oryza meridionalis	67.48	6.00e-75	273.00
IUUC-Oni-082633	Oryza nivara	67.48	5.00e-75	273.00
IUUC-Osa-086209	Oryza sativa	67.48	1.00e-74	272.00
IUUC-Ptr-090726	Pan troglodytes	33.00	6.00e-14	72.40
IUUC-Pan-091958	Papio anubis	33.00	5.00e-14	72.80
IUUC-Ppa-095613	Physcomitrella patens	56.99	1.00e-56	212.00
IUUC-Pab-097950	Pongo abelii	33.00	2.00e-14	73.20
IUUC-Ppe-101311	Prunus persica	83.09	1.00e-111	394.00
IUUC-Sha-107618	Sarcophilus harrisii	52.63	7.00e-15	73.60
IUUC-Smo-109389	Selaginella moellendorffii	61.78	3.00e-67	247.00
IUUC-Tca-121397	Theobroma cacao	88.41	1.00e-119	421.00
IUUC-Tur-125977	Triticum urartu	60.67	3.00e-66	244.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence