iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007101

UUCD1 version

UUC-ArT-01128

Ensembl Protein ID

AT5G01830.1

UniProt Accession

Q9LZW3; PUB16_ARATH

Genbank Protein ID

CAB82753.1; AED90398.1; AAU05490.1; AAU45223.1; BAF01259.1

Protein Name

U-box domain-containing protein 16; Plant U-box protein 16; RING-type E3 ubiquitin transferase PUB16

Genbank Nucleotide ID

AL162351; CP002688; BT015367; BT015725; AK229397

Gene Name

PUB16; At5g01830; T20L15_100

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G01830	AT5G01830.1	AT5G01830.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	4.70e-32	110.8	274	346

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           +p++f+CpI+lelMrdPvv+++G+tydr+sI  w++sg++tcP+t+q l++++lvPn +l++li  wc ++++
   Q: 274  IPADFRCPITLELMRDPVVVATGQTYDRESIDLWIQSGHNTCPKTGQVLKHTSLVPNRALKNLIVLWCRDQKI 346
           8*******************************************************************99875 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as an E3 ubiquitin ligase.

Protein Sequence
(Fasta)

MAVTLDSPSP ARKRRPLVVG SFESPKLSSD TKLTRSLFLA SHEISSMQPL PFILRRNSLS 60
LIRKVKILAS VFDELLLPRS QLVVYSQSAH LCFEEMQIVM QRIKSLIDDC SRVSKLWLLL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TATATATAAT TTAAATATAT TGAAAAAGAG AAGACGAGAT CAATTCTCTC TAACAAACTT 60
GTACCAACTG TTGCATTCTT ATGTCACCAA AACGAAGACC TTATCTTCAT TCTTACATTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity
GO:0010200--P:response to chitin

KEGG

ath:AT5G01830

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000493	Aegilops tauschii	49.68	2.00e-70	258.00
IUUC-Atr-002566	Amborella trichopoda	45.17	4.00e-121	428.00
IUUC-Aly-005828	Arabidopsis lyrata	95.40	0.00e+00	1214.00
IUUC-Bdi-014870	Brachypodium distachyon	46.10	1.00e-124	439.00
IUUC-Bol-015511	Brassica oleracea	83.04	0.00e+00	1063.00
IUUC-Bra-017197	Brassica rapa	82.62	0.00e+00	1053.00
IUUC-Gma-043531	Glycine max	57.16	3.00e-168	584.00
IUUC-Hvu-047557	Hordeum vulgare	47.03	6.00e-116	410.00
IUUC-Lpe-051445	Leersia perrieri	44.79	6.00e-110	390.00
IUUC-Mtr-058241	Medicago truncatula	53.98	1.00e-161	562.00
IUUC-Mac-065033	Musa acuminata	46.00	3.00e-107	382.00
IUUC-Oba-075591	Oryza barthii	46.38	2.00e-112	399.00
IUUC-Obr-076550	Oryza brachyantha	45.90	2.00e-98	352.00
IUUC-Ogl-076947	Oryza glaberrima	46.46	3.00e-112	398.00
IUUC-Ogu-078626	Oryza glumaepatula	46.38	9.00e-113	400.00
IUUC-Oin-080113	Oryza indica	46.22	2.00e-112	399.00
IUUC-Olo-080301	Oryza longistaminata	43.02	4.00e-70	258.00
IUUC-Ome-081924	Oryza meridionalis	46.58	1.00e-114	406.00
IUUC-Oni-082284	Oryza nivara	46.38	2.00e-112	399.00
IUUC-Opu-083971	Oryza punctata	46.18	2.00e-109	389.00
IUUC-Oru-084898	Oryza rufipogon	46.22	6.00e-120	424.00
IUUC-Osa-085986	Oryza sativa	44.62	1.00e-108	386.00
IUUC-Pop-099292	Populus trichocarpa	58.37	0.00e+00	728.00
IUUC-Ppe-101643	Prunus persica	59.31	0.00e+00	743.00
IUUC-Sit-110652	Setaria italica	44.70	3.00e-123	435.00
IUUC-Sly-111346	Solanum lycopersicum	55.46	0.00e+00	682.00
IUUC-Stu-112435	Solanum tuberosum	55.38	0.00e+00	655.00
IUUC-Sbi-114567	Sorghum bicolor	42.77	2.00e-111	395.00
IUUC-Tca-121203	Theobroma cacao	63.25	0.00e+00	760.00
IUUC-Tae-123409	Triticum aestivum	48.43	6.00e-102	364.00
IUUC-Vvi-131545	Vitis vinifera	61.05	0.00e+00	689.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence