iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Aly-005431

Ensembl Protein ID

scaffold_602443.1

UniProt Accession

D7M2C6; D7M2C6_ARALL

Genbank Protein ID

EFH48330.1

Protein Name

Nucleotide binding protein

Genbank Nucleotide ID

GL348718

Gene Name

RUP2; ARALYDRAFT_910386

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
scaffold_602443.1	scaffold_602443.1	scaffold_602443.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.00e-19	70.5	233	270

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDlrtgvllk 37
           gHt  v+ ++f +++++v+++ Dg +k+W++ +g++++
   Q: 233  GHTKTVSYVRFlDGCTVVTAGTDGCLKLWSVEDGRVIR 270
           8**********65599******************9887 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MNTLHPHKQQ QEQEEEAKHE WDLSLSTVVS SSSSSASDVI GAIEFDPTDN IVATAGISRK 60
IRFYGLPSLL RTNAVSGTGV SFVDQATACE YYICTPAKLS SLRWRPGSGS RVIGSGDYDG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAGTCATTAC TCTGTTTTCA TATGAACACT CTTCATCCTC ACAAGCAGCA ACAAGAACAA 60
GAAGAAGAAG CTAAACATGA ATGGGATCTT TCTCTCTCCA CCGTCGTCTC TTCCTCCTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR027295--Quinoprotein_ADH-like_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0009658--P:chloroplast organization
GO:0043496--P:regulation of protein homodimerization activity
GO:0010224--P:response to UV-B

KEGG

aly:ARALYDRAFT_910386

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002851	Amborella trichopoda	46.51	3.00e-84	305.00
IUUC-Ath-006939	Arabidopsis thaliana	95.11	0.00e+00	635.00
IUUC-Bdi-014616	Brachypodium distachyon	47.63	2.00e-62	232.00
IUUC-Bol-016424	Brassica oleracea	87.98	1.00e-159	555.00
IUUC-Ogl-077687	Oryza glaberrima	46.18	3.00e-62	231.00
IUUC-Oin-079632	Oryza indica	45.91	4.00e-62	231.00
IUUC-Ome-081923	Oryza meridionalis	45.32	3.00e-59	221.00
IUUC-Oni-082448	Oryza nivara	46.49	2.00e-63	235.00
IUUC-Oru-085278	Oryza rufipogon	45.32	3.00e-59	221.00
IUUC-Ppa-095874	Physcomitrella patens	36.20	5.00e-58	218.00
IUUC-Pop-099510	Populus trichocarpa	64.13	3.00e-120	424.00
IUUC-Ppe-102088	Prunus persica	65.96	4.00e-121	427.00
IUUC-Sly-111536	Solanum lycopersicum	57.32	1.00e-111	395.00
IUUC-Stu-112915	Solanum tuberosum	58.26	9.00e-115	405.00
IUUC-Tca-120952	Theobroma cacao	63.35	2.00e-126	444.00
IUUC-Tae-123036	Triticum aestivum	46.25	2.00e-66	245.00
IUUC-Vvi-131711	Vitis vinifera	65.85	1.00e-122	432.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence