iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099305

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000342

Gene Name

POPTRDRAFT_561154; POPTR_0006s21910g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0006s21910	POPTR_0006s21910.1	POPTR_0006s21910.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	4.50e-32	111.1	5	78

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 1    evpeeflCpIslelMrdPvvlpsGitydrssIekwlasggk.tcPvtrqplteedlvPnltlrrliqawceens 73
           evp++flCpIsl++M+dPv++p+Gitydr+sIekwl sg++ tcP+t+  ++  +++Pn+tlrrliq+wc  n+
   Q: 5    EVPSFFLCPISLQIMKDPVIVPTGITYDRESIEKWLFSGKNdTCPITKLVISGCEVTPNHTLRRLIQSWCTLNA 78
           69**********************************999999****************************9876 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MEDIEVPSFF LCPISLQIMK DPVIVPTGIT YDRESIEKWL FSGKNDTCPI TKLVISGCEV 60
TPNHTLRRLI QSWCTLNASY GIERIPTPKP PINKTQVAKL LNDAKSPQQQ VKCIRKLRSI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAACCAATCC ATACAACTCC TCAGAACCTA CTCTCAAATC AAAATTCTCT AAATCCTTCA 60
ATTCTTGGCT ATTTAATCTA CTTTCATCTA CTTGTCGATT AACCTCTACT TTCATATCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR011987--ATPase_V1-cplx_hsu_C
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

pop:POPTR_0006s21910g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005797	Arabidopsis lyrata	60.74	9.00e-148	516.00
IUUC-Ath-007272	Arabidopsis thaliana	60.51	4.00e-141	493.00
IUUC-Bol-015372	Brassica oleracea	60.28	5.00e-149	520.00
IUUC-Bra-017221	Brassica rapa	62.00	7.00e-151	526.00
IUUC-Lpe-051695	Leersia perrieri	41.69	1.00e-74	273.00
IUUC-Ogu-079030	Oryza glumaepatula	45.33	5.00e-78	284.00
IUUC-Oin-079734	Oryza indica	45.33	5.00e-78	284.00
IUUC-Oni-082818	Oryza nivara	45.10	5.00e-78	284.00
IUUC-Opu-083355	Oryza punctata	46.22	1.00e-85	309.00
IUUC-Oru-085239	Oryza rufipogon	45.33	4.00e-78	284.00
IUUC-Osa-086041	Oryza sativa	45.33	5.00e-78	284.00
IUUC-Sly-111579	Solanum lycopersicum	64.89	2.00e-143	501.00
IUUC-Stu-112276	Solanum tuberosum	64.81	6.00e-162	563.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence