iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114808

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000763

Gene Name

SORBI_004G253100

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb04g029250	Sb04g029250.1	Sb04g029250.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.80e-19	70.4	168	244

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggk.....tcPvtrqplteedlvPnltlrrliqawceens 73
           ++++f+Cp+++e+M+dPv++ sG+t dr++Ie+++++         cPv + +++++++v n +l+++i++w  +n+
   Q: 168  LYDAFICPLTNEIMTDPVTIDSGVTCDRRAIEEYIERFADssepvYCPVRKMTMQSKTMVSNASLKSVIEEWTTRNE 244
           5899*******************************6655555679****************************9986 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MLSVATTNVS QGNSMESVMA TMERQTARRT QTNVTQMIDS LFASVNLAKD LSARCKGRTY 60
TADEIQSIAQ DLENVLQNIY DDLCRIPASA FGSNAYMDVL IKSQSMMDYC EADIPINVTG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTTGTCAG TAGCTACCAC CAATGTCAGC CAAGGGAACT CCATGGAATC AGTCATGGCA 60
ACAATGGAGC GTCAAACAGC TCGCAGGACC CAGACTAATG TGACACAGAT GATAGATTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

sbi:SORBI_04g029250

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000318	Aegilops tauschii	69.29	0.00e+00	1291.00
IUUC-Aly-006424	Arabidopsis lyrata	45.12	0.00e+00	674.00
IUUC-Bdi-014418	Brachypodium distachyon	74.25	0.00e+00	1335.00
IUUC-Hvu-047634	Hordeum vulgare	71.35	0.00e+00	1311.00
IUUC-Lpe-051636	Leersia perrieri	70.35	0.00e+00	1199.00
IUUC-Oba-075656	Oryza barthii	73.72	0.00e+00	1325.00
IUUC-Obr-076391	Oryza brachyantha	71.16	0.00e+00	1279.00
IUUC-Ogl-077675	Oryza glaberrima	73.72	0.00e+00	1325.00
IUUC-Ogu-078313	Oryza glumaepatula	73.92	0.00e+00	1327.00
IUUC-Oin-079739	Oryza indica	73.41	0.00e+00	1340.00
IUUC-Olo-080998	Oryza longistaminata	73.72	0.00e+00	1366.00
IUUC-Ome-082000	Oryza meridionalis	73.79	0.00e+00	1335.00
IUUC-Oni-082054	Oryza nivara	68.65	0.00e+00	1286.00
IUUC-Opu-083582	Oryza punctata	73.28	0.00e+00	1320.00
IUUC-Oru-084523	Oryza rufipogon	73.61	0.00e+00	1292.00
IUUC-Osa-086199	Oryza sativa	73.61	0.00e+00	1293.00
IUUC-Pop-099505	Populus trichocarpa	42.63	0.00e+00	684.00
IUUC-Sit-110498	Setaria italica	88.93	0.00e+00	1563.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence