iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	16339806

Classification

Family	E-value	Score	Start	End
E3 activity/RING/RING	2.60e-09	38.3	54	109

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf...kdgplvlpCgHvfhadCl..qkw.....pglknssskefrCPlCr 46
           C+iC+e+f   ++ p+vl CgH+++++C+   +w     p ++ +   +++CP+C+
   Q: 54   CPICWESFnivENVPYVLWCGHTMCKNCIlgLQWaivklPTHPVQLPLFISCPWCN 109
           ********999999***************99999*********************7 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MLSIPDTRMW NLASSYLTGN IGPKNDIRRP VHAHAECSDD DVSSVGSKDE GLECPICWES 60
FNIVENVPYV LWCGHTMCKN CILGLQWAIV KLPTHPVQLP LFISCPWCNL LSFRLVFRGT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAAAATATCA AAAACACTTT TGGAAGGAAA ACTTGGGTAC ACGATTGAAA CGACGTCGTT 60
TATGAAAGCA AAACAAAACC CAGAAAGTTT AGGTCTCGCC GGAAAAATCG AATCAAGCAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR027370--Znf-RING_LisH
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF13445--zf-RING_UBOX

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding

KEGG

ath:AT3G29270

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000568	Aegilops tauschii	57.89	7.00e-72	262.00
IUUC-Atr-002488	Amborella trichopoda	60.59	2.00e-72	265.00
IUUC-Aly-005618	Arabidopsis lyrata	97.65	1.00e-132	464.00
IUUC-Bgr-012033	Blumeria graminis	33.33	5.70e-02	32.70
IUUC-Bdi-014924	Brachypodium distachyon	60.15	2.00e-68	251.00
IUUC-Bol-015908	Brassica oleracea	85.93	2.00e-122	430.00
IUUC-Bra-017276	Brassica rapa	85.88	5.00e-126	442.00
IUUC-Cel-018218	Caenorhabditis elegans	43.90	1.00e-06	47.80
IUUC-Gma-043252	Glycine max	63.91	3.00e-88	317.00
IUUC-Hvu-047109	Hordeum vulgare	59.25	7.00e-69	252.00
IUUC-Lpe-050700	Leersia perrieri	59.77	2.00e-64	238.00
IUUC-Mtr-057842	Medicago truncatula	63.43	1.00e-88	318.00
IUUC-Mac-065325	Musa acuminata	57.74	2.00e-75	274.00
IUUC-Oba-075020	Oryza barthii	61.28	1.00e-82	298.00
IUUC-Obr-076124	Oryza brachyantha	59.54	8.00e-74	269.00
IUUC-Ogl-077905	Oryza glaberrima	61.28	1.00e-82	298.00
IUUC-Ogu-078854	Oryza glumaepatula	61.28	7.00e-83	299.00
IUUC-Oin-079896	Oryza indica	60.90	1.00e-82	298.00
IUUC-Olo-080692	Oryza longistaminata	61.65	4.00e-84	303.00
IUUC-Oni-082962	Oryza nivara	61.28	7.00e-83	299.00
IUUC-Opu-084174	Oryza punctata	60.53	6.00e-83	299.00
IUUC-Oru-084363	Oryza rufipogon	60.90	5.00e-82	296.00
IUUC-Osa-085569	Oryza sativa	60.90	5.00e-82	296.00
IUUC-Ppa-096025	Physcomitrella patens	38.78	7.00e-47	179.00
IUUC-Pop-100053	Populus trichocarpa	63.20	2.00e-77	281.00
IUUC-Ppe-101521	Prunus persica	64.29	1.00e-86	311.00
IUUC-Sit-110791	Setaria italica	59.92	3.00e-71	260.00
IUUC-Sly-111787	Solanum lycopersicum	61.94	6.00e-94	336.00
IUUC-Stu-112131	Solanum tuberosum	61.94	3.00e-94	337.00
IUUC-Sbi-114208	Sorghum bicolor	59.18	2.00e-71	261.00
IUUC-Tca-121818	Theobroma cacao	62.17	5.00e-69	253.00
IUUC-Tae-125903	Triticum aestivum	59.77	8.00e-70	256.00
IUUC-Tur-126036	Triticum urartu	59.40	1.00e-68	251.00
IUUC-Vvi-130901	Vitis vinifera	63.06	1.00e-77	281.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence