iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bra-016936

Ensembl Protein ID

Bra040398.1-P

UniProt Accession

M4FH20; M4FH20_BRARP

Protein Name

Auxin-responsive protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bra040398	Bra040398.1	Bra040398.1-P

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UFD/PB1	4.30e-16	59.9	116	212

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UFD/PB1

   S: 4    vkvsykgeirsfaldlekpgkfedLlkavrt.lt.......................elknsevalkYeDedGDlvtlksDedldkavsllaskks 75
           vkvs++g+++++++dl+ + +++dL +a+ + +                         l++s++ ++YeD+dGD++ l++D+++ ++v+      s
   Q: 116  VKVSMDGAPYLRKIDLKLYKTYQDLSDALSKmFSsftlgnygpqgmkdfmnesrlidLLNGSDYVPTYEDKDGDWM-LVGDVPWGMFVD------S 204
           9******************************622566999****************99999***************.************......* PP
   S: 76   llrlliqk 83
           ++r++i+k
   Q: 205  CKRIRIMK 212
           *******8 PP

Organism

Brassica rapa

Functional Description
(View)

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Protein Sequence
(Fasta)

MINFEATELR LGLPGGNHGG DMAMKNNGKR GFSETVDLKL NLSSTALDSV SGVDLENMKE 60
KVVKPPAKAQ VVGWPPVRSF RKNVMSGQKP TAGDATEGTE KTSSSNGATS SAAAYVKVSM 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGATCAATT TTGAGGCGAC GGAGCTGAGG TTAGGGCTGC CGGGTGGCAA TCACGGAGGA 60
GACATGGCCA TGAAAAATAA TGGGAAACGA GGATTTTCTG AGACCGTTGA TCTCAAACTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0927--Auxin signaling pathway
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR033389--AUX/IAA_dom
IPR003311--AUX_IAA
IPR000270--PB1_dom

PROSITE

PS51745--PB1

Pfam

PF02309--AUX_IAA

Gene Ontology

GO:0005634--C:nucleus
GO:0009734--P:auxin-activated signaling pathway
GO:0006355--P:regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000264	Aegilops tauschii	58.64	3.00e-50	190.00
IUUC-Atr-002559	Amborella trichopoda	63.52	2.00e-80	291.00
IUUC-Aly-006188	Arabidopsis lyrata	88.56	1.00e-102	365.00
IUUC-Ath-007356	Arabidopsis thaliana	90.68	6.00e-111	392.00
IUUC-Bdi-014859	Brachypodium distachyon	54.65	4.00e-72	263.00
IUUC-Bol-016371	Brassica oleracea	97.40	8.00e-115	405.00
IUUC-Hvu-047087	Hordeum vulgare	71.01	7.00e-66	241.00
IUUC-Lpe-050724	Leersia perrieri	45.83	1.00e-42	165.00
IUUC-Mtr-058641	Medicago truncatula	64.90	1.00e-81	295.00
IUUC-Mac-065450	Musa acuminata	61.67	4.00e-71	260.00
IUUC-Obr-076745	Oryza brachyantha	53.44	2.00e-64	238.00
IUUC-Ogl-077429	Oryza glaberrima	50.19	1.00e-59	222.00
IUUC-Olo-080519	Oryza longistaminata	51.27	2.00e-40	157.00
IUUC-Opu-083338	Oryza punctata	51.16	3.00e-47	181.00
IUUC-Oru-084731	Oryza rufipogon	60.12	2.00e-46	178.00
IUUC-Ppa-095740	Physcomitrella patens	42.44	2.00e-33	136.00
IUUC-Pab-098295	Pongo abelii	57.89	4.90e-01	27.30
IUUC-Pop-099218	Populus trichocarpa	71.90	3.00e-87	314.00
IUUC-Sit-110063	Setaria italica	57.58	1.00e-71	262.00
IUUC-Sly-111769	Solanum lycopersicum	69.35	2.00e-90	324.00
IUUC-Stu-112038	Solanum tuberosum	69.23	6.00e-87	313.00
IUUC-Sbi-114725	Sorghum bicolor	72.78	2.00e-66	244.00
IUUC-Tca-121532	Theobroma cacao	71.85	2.00e-92	331.00
IUUC-Tur-126762	Triticum urartu	49.61	2.00e-59	222.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence