iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Aly-005942

UUCD1 version

UUC-ArL-01274

Ensembl Protein ID

fgenesh2_kg.4__383__AT2G24640.1

UniProt Accession

D7LIB1; D7LIB1_ARALL

Genbank Protein ID

EFH56862.1

Protein Name

Ubiquitin carboxyl-terminal hydrolase family protein

Genbank Nucleotide ID

GL348716

Gene Name

UBP19; ARALYDRAFT_481323

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh2_kg.4__383__AT2G24640.1	fgenesh2_kg.4__383__AT2G24640.1	fgenesh2_kg.4__383__AT2G24640.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	6.50e-71	239.9	174	479

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 1    tGlkNlgNtCYmNSvLQcLsnipelrellle.kkkeklneenpkepkgellkslqklfeelwkskkkavsprellkal 77
           +Gl+N gN+C+ N vLQcLs +++l  +lle  +k++++++     + ++ +++++ +    ++++  +sp ++++ l
   Q: 174  CGLTNCGNSCFANVVLQCLSWTRPLVAYLLErGHKRECRRN-----DWCFFCEFENHLDRA-NHSRFPFSPMNIISRL 245
           7******************************7778888776.....56**********999.88889*********** PP
   S: 78   kkeaeefsgyeqqDaqEflaflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqik 155
            ++  ++   +q+Da+E+++  +d +++ +         +e++ +       +   +  ++++li+ +F+g l+sq++
   Q: 246  PNIGGNLGYGRQEDAHELMRSAIDMMQSVC--------LDEFGGE-------KVVPPRAQETTLIQYIFGGLLQSQVQ 308
           ******************************........3444444.......67899999****************** PP
   S: 156  clecdnvssreepfldlslpvpgkeetkkeslqdcLesftkeeelegenkyycekckkkqeaekklklkklPevLilh 233
           c +c nvs ++e+++dl+++++g+      sl++cL++ft++e l+g+n y+c++c+++++a k+l+++  P++L++ 
   Q: 309  CTACSNVSDQYENMMDLTVEIHGDAV----SLEECLDQFTAKEWLQGDNLYKCDRCDDYVKACKRLSIRCAPNILTIA 382
           *************************7....8*********************************************** PP
   S: 234  LkRfsfseeqksrekinkkvefpleLdlspfctspeekqkekkkYeLiavvvHsGslss...GHYvayvknekgkWll 308
           LkRf    ++++  k+nk+++fp+++dl p+++s  e+   ++ Y+L+av+vH   l+    GHY++yvk+ +g+W++
   Q: 383  LKRF----QGGRFGKLNKRISFPETFDLGPYMSSGVEG---SDVYKLYAVIVHLDMLNAsffGHYICYVKDFRGNWYR 453
           ****....567889********************5544...89**********995554455**************** PP
   S: 309  fdDskVtevkeeevleetgstaYvlfYkr 337
           +dDs+V++v+ e+vl+   + aY+l+Y r
   Q: 454  IDDSEVEKVELEDVLS---QRAYMLLYSR 479
           ****************...9*******87 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MHEVGLFVDL NFFTQLILTL FFLSIGLLYF VKRTAAKYFE VGGGSGGFDR DHRRDFMVPD 60
TVECSVCGKT STKKCSRCKS VRYCSADCQT SDWKSGHKLK CKVFRSTDSS PVGRDDIDYK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATTCTCTTTG GCATCTCTGA ATCGAATCTG AGAAGAAGAA GAAGAAGAAG AAGAAGGAGA 60
TCGATGTTCG AGAGGGAATT AGATGCATGA AGTTGGATTA TTTGTGGATC TGAATTTCTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0378--Hydrolase
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001394--Peptidase_C19_UCH
IPR018200--USP_CS
IPR028889--USP_dom
IPR002893--Znf_MYND

PROSITE

PS00972--USP_1
PS50235--USP_3
PS01360--ZF_MYND_1
PS50865--ZF_MYND_2

Pfam

PF00443--UCH
PF01753--zf-MYND

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0046872--F:metal ion binding
GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0016579--P:protein deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

aly:ARALYDRAFT_481323

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001055	Aegilops tauschii	64.13	9.00e-140	490.00
IUUC-Atr-002997	Amborella trichopoda	56.01	3.00e-160	558.00
IUUC-Ath-007334	Arabidopsis thaliana	93.33	0.00e+00	1241.00
IUUC-Bdi-014660	Brachypodium distachyon	59.41	4.00e-152	531.00
IUUC-Bol-015083	Brassica oleracea	79.39	0.00e+00	979.00
IUUC-Bra-017569	Brassica rapa	80.77	0.00e+00	981.00
IUUC-Cel-018627	Caenorhabditis elegans	29.11	5.00e-31	129.00
IUUC-Gma-042920	Glycine max	63.33	0.00e+00	657.00
IUUC-Hvu-047620	Hordeum vulgare	60.82	1.00e-157	550.00
IUUC-Mtr-057748	Medicago truncatula	61.18	0.00e+00	650.00
IUUC-Ogl-077264	Oryza glaberrima	63.45	2.00e-158	552.00
IUUC-Ogu-078646	Oryza glumaepatula	63.45	2.00e-158	552.00
IUUC-Olo-080250	Oryza longistaminata	63.45	1.00e-158	553.00
IUUC-Oni-082102	Oryza nivara	63.22	3.00e-157	548.00
IUUC-Oru-084644	Oryza rufipogon	63.45	3.00e-158	551.00
IUUC-Osa-086195	Oryza sativa	63.29	9.00e-149	520.00
IUUC-Sja-107805	Schizosaccharomyces japonicus	35.60	2.00e-53	202.00
IUUC-Sit-109798	Setaria italica	63.49	2.00e-160	559.00
IUUC-Sly-111333	Solanum lycopersicum	60.15	0.00e+00	654.00
IUUC-Sbi-113982	Sorghum bicolor	61.64	2.00e-158	552.00
IUUC-Tca-121521	Theobroma cacao	62.36	0.00e+00	685.00
IUUC-Tae-125546	Triticum aestivum	60.27	1.00e-154	540.00
IUUC-Tur-126423	Triticum urartu	63.78	2.00e-139	489.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence