iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT	UniProt
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
UBD/Alpha-Helix/UIM	UIM	11406394; 20059542

Classification

Family	E-value	Score	Start	End
UBD/Alpha-Helix/UIM	0.14	13.3	230	248
UBD/Alpha-Helix/UBA	0.007	17.4	5	42
ULD/UDP/UFD/UBX	3.40e-12	47.6	484	556

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UIM

   S: 1    dEdeeLqlAlalSlqEeee 19
           ++d++++ A+++Sl+ +ee
   Q: 230  EDDDDIAIAVTMSLKSAEE 248
           69**************997 PP

UBD/Alpha-Helix/UBA

   S: 3    dedkleqlve.MGFdreealqaLraannnleaAveyLl 39
           ++++++ +++ +G ++  alq L+++ ++l+ Av+ ++
   Q: 5    NQEAIDTFISiTGASDAVALQKLEEHRGDLNQAVNAYF 42
           799*******************************9877 PP

ULD/UDP/UFD/UBX

   S: 3    teqatlqiRlpdGkrlvrkFpssttleqiyqfveyllvessdpFeLvspfPrrtlkpeehmstlqeagLvpsg 75
           +++ tl iR+pdG r  r+F +s++l+++++f++ ++v +  ++ Lv+p+Pr  + + e++stl+++gL+++ 
   Q: 484  ENAITLLIRMPDGTRRGRRFLKSDKLQTLFNFIDIARVVKPNTYRLVRPYPRHAFGDGESESTLNDLGLTSKQ 556
           4577999**************************************************************9864 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MATPNQEAID TFISITGASD AVALQKLEEH RGDLNQAVNA YFSEGDRNVV REAPVNDDDE 60
MDIDDVIPAP QSPLSMFNAA RTIGRPPFSL LDSDFARRVF DSDPLMPRPP FVSHPREVRQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAACAATTGT TCTTCACTTT TAATAATCAT CCAATAGAAC CATAGAGAAA CTTCAAGACT 60
TTCCACAAAA ATTCATCATC ATCACATAAC CAAGAAAACA AACGAGGAAA AAAGCCCAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0007--Acetylation
KW-0025--Alternative splicing
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0833--Ubl conjugation pathway

Interpro

IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR001012--UBX_dom
IPR003903--UIM_dom

PROSITE

PS50033--UBX
PS50330--UIM

Pfam

PF00789--UBX

SMART

SM00166--UBX
SM00726--UIM

Gene Ontology

GO:0005829--C:cytosol
GO:0005634--C:nucleus
GO:0016192--P:vesicle-mediated transport

KEGG

ath:AT4G11740

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001073	Aegilops tauschii	45.65	5.00e-88	318.00
IUUC-Atr-002702	Amborella trichopoda	68.20	3.00e-52	199.00
IUUC-Aly-006024	Arabidopsis lyrata	91.52	0.00e+00	879.00
IUUC-Bdi-014955	Brachypodium distachyon	47.54	1.00e-89	323.00
IUUC-Bol-015077	Brassica oleracea	79.61	0.00e+00	686.00
IUUC-Bra-016932	Brassica rapa	78.46	0.00e+00	674.00
IUUC-Gma-043678	Glycine max	49.43	1.00e-94	340.00
IUUC-Hvu-047478	Hordeum vulgare	42.71	2.00e-71	262.00
IUUC-Lpe-051095	Leersia perrieri	48.97	2.00e-97	349.00
IUUC-Mtr-058440	Medicago truncatula	46.72	2.00e-92	332.00
IUUC-Mac-064592	Musa acuminata	47.06	1.00e-91	330.00
IUUC-Oba-075728	Oryza barthii	46.70	4.00e-89	321.00
IUUC-Obr-076827	Oryza brachyantha	48.05	2.00e-85	309.00
IUUC-Ogl-077428	Oryza glaberrima	47.48	6.00e-99	353.00
IUUC-Ogu-078920	Oryza glumaepatula	47.70	5.00e-91	327.00
IUUC-Oin-079876	Oryza indica	47.88	4.00e-91	328.00
IUUC-Olo-080220	Oryza longistaminata	47.44	1.00e-90	327.00
IUUC-Ome-081904	Oryza meridionalis	48.40	3.00e-97	348.00
IUUC-Oni-082968	Oryza nivara	48.40	5.00e-102	364.00
IUUC-Opu-083441	Oryza punctata	47.99	6.00e-105	374.00
IUUC-Oru-084236	Oryza rufipogon	47.88	2.00e-91	328.00
IUUC-Osa-085356	Oryza sativa	48.23	3.00e-101	361.00
IUUC-Pop-099052	Populus trichocarpa	48.77	1.00e-79	290.00
IUUC-Ppe-101824	Prunus persica	54.06	2.00e-97	348.00
IUUC-Smo-109261	Selaginella moellendorffii	51.64	9.00e-51	193.00
IUUC-Sly-111038	Solanum lycopersicum	47.67	1.00e-108	385.00
IUUC-Stu-112767	Solanum tuberosum	45.99	6.00e-97	347.00
IUUC-Sbi-114655	Sorghum bicolor	50.17	4.00e-97	348.00
IUUC-Tca-121591	Theobroma cacao	55.06	2.00e-113	402.00
IUUC-Tae-125521	Triticum aestivum	50.43	2.00e-102	365.00
IUUC-Tur-126134	Triticum urartu	49.74	2.00e-94	338.00
IUUC-Vvi-130858	Vitis vinifera	53.83	5.00e-126	444.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence