iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Oba-075845

Ensembl Protein ID

OBART10G14370.2

UniProt Accession

A0A0D3HF42; A0A0D3HF42_9ORYZ

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OBART10G14370	OBART10G14370.1	OBART10G14370.1
OBART10G14370	OBART10G14370.2	OBART10G14370.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.40e-38	127.6	184	219
UBD/Beta-Prp	1.80e-53	182.7	14	257

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           H+++++cl+f +   ll++Gs D+t+k WDl t+ l
   Q: 184  HEGPINCLDFhPHeFLLATGSADKTVKFWDLETFEL 219
           9*********9776789**************99876 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlsl 100
           +h s ++cvkf  + +++l+tg++d+++ +w + +++ + slsg +++v +v+f++++ ++  g++ +tik+wd++  k v+t++gh +s  sl
   Q: 14   AHASDVNCVKFgRKTSRILITGGEDQKVNLWAIGKPSSILSLSGLTSPVESVSFDSSEAMIGAGASSGTIKIWDVDEAKVVRTFTGHRSSCASL 107
           5667788899999999999999999999999999999999999999999999999999888899999999999999999999999999999999 PP
   S: 101  sfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngke 194
           +f+p g++++sGs+d   ++wd++++ c++ t +gh++ + ++++ pdg+ +vsG+ D+ v++Wdl  gkll++++  h++++++l+f++  + 
   Q: 108  DFHPFGEFFASGSSDTNMKIWDMRKKGCIH-TYKGHTRRIDVLRFTPDGRWIVSGGSDNSVKIWDLTAGKLLHDFRN-HEGPINCLDFHPHEFL 199
           999999999999999999999999999999.9999999999999999999999999999999999999999999987.9999999999999999 PP
   S: 195  lvsgsldgtvklwdlqtgec........vrtlnghtdnvksvrfspnderlvsgssDgs 245
           l++gs d+tvk+wdl+t e          r++    + v+s+ f ++++ l +g  ++s
   Q: 200  LATGSADKTVKFWDLETFELigssgpenSREYFVPASVVRSMTFNKDGKSLFCGL-HES 257
           9999999999999999555544444444778888889999999998888888875.444 PP

Organism

Oryza barthii

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MSTKRAYKLQ EFVAHASDVN CVKFGRKTSR ILITGGEDQK VNLWAIGKPS SILSLSGLTS 60
PVESVSFDSS EAMIGAGASS GTIKIWDVDE AKVVRTFTGH RSSCASLDFH PFGEFFASGS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCCACCA AGCGCGCGTA CAAGCTCCGT ATCCTCGATT CTTCTTGCCG CTTGAATCCT 60
CGGTTTGGGA GTTTTAGATT AAATTTGAGT TCTTTTTTTG GGTCGAGTTG TTCTTGCCCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000873	Aegilops tauschii	55.53	0.00e+00	859.00
IUUC-Bdi-014552	Brachypodium distachyon	64.90	0.00e+00	1059.00
IUUC-Hvu-047781	Hordeum vulgare	62.76	0.00e+00	1021.00
IUUC-Lpe-051597	Leersia perrieri	85.84	0.00e+00	812.00
IUUC-Obr-076798	Oryza brachyantha	82.18	0.00e+00	1464.00
IUUC-Ogu-079022	Oryza glumaepatula	94.44	0.00e+00	1671.00
IUUC-Oin-080135	Oryza indica	96.71	0.00e+00	1710.00
IUUC-Olo-080665	Oryza longistaminata	93.86	0.00e+00	1458.00
IUUC-Ome-081884	Oryza meridionalis	96.44	0.00e+00	1677.00
IUUC-Oni-082726	Oryza nivara	97.70	0.00e+00	1707.00
IUUC-Opu-083637	Oryza punctata	93.08	0.00e+00	1656.00
IUUC-Oru-085123	Oryza rufipogon	96.59	0.00e+00	1707.00
IUUC-Osa-086267	Oryza sativa	96.59	0.00e+00	1707.00
IUUC-Sit-109837	Setaria italica	63.86	0.00e+00	1087.00
IUUC-Tae-123176	Triticum aestivum	61.08	0.00e+00	983.00
IUUC-Tbe-128071	Tupaia belangeri	31.02	7.00e-30	124.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence