iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114817

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000763

Gene Name

SORBI_004G157400

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb04g021020	Sb04g021020.1	Sb04g021020.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.40e-06	27.4	270	302

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrt 32
           H ++vt++af  + +l+++++ D +ik+WDlr+
   Q: 270  HHGPVTAVAFdRGgHLMATAGVDRKIKIWDLRK 302
           8899******9666899*************986 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MAPARVDAEK EAQHELEVKV AKYSRGQGAD LKALGDKKLK GQLSVKEKLY GQSAKAAAKA 60
EKWLMPNDGG ILEPDHLEKT YRFSQRDILT EVDLLSSRKP FDMILPVLGP YNIGYTPNGR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAGAGGGAAA CCTGCCGCGC TTGGCGGCTC CCTCGACACC GTCGGCCGTC GCTTGGGACT 60
CGTCGGGTCG ACCCCGTTTC CACCGGGCAC CTCCTGTGAG ACAGTCCACC CCCTCCCCCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR012952--BING4_C_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08149--BING4CT
PF00400--WD40

SMART

SM01033--BING4CT
SM00320--WD40

Gene Ontology

GO:0030686--C:90S preribosome
GO:0005730--C:nucleolus
GO:0032040--C:small-subunit processome
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

sbi:SORBI_04g021020

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000921	Aegilops tauschii	78.39	0.00e+00	805.00
IUUC-Aly-005663	Arabidopsis lyrata	62.12	5.00e-170	590.00
IUUC-Ath-007405	Arabidopsis thaliana	62.50	3.00e-170	590.00
IUUC-Bdi-014459	Brachypodium distachyon	81.61	0.00e+00	783.00
IUUC-Bol-015965	Brassica oleracea	63.13	6.00e-165	573.00
IUUC-Bra-016837	Brassica rapa	62.69	1.00e-158	551.00
IUUC-Cre-022704	Chlamydomonas reinhardtii	47.16	2.00e-131	462.00
IUUC-Cne-026784	Cryptococcus neoformans	36.87	9.00e-70	257.00
IUUC-Eeu-034982	Erinaceus europaeus	42.29	7.00e-53	200.00
IUUC-Gac-042249	Gasterosteus aculeatus	40.73	7.00e-89	320.00
IUUC-Gma-043274	Glycine max	62.43	0.00e+00	637.00
IUUC-Hvu-047436	Hordeum vulgare	83.20	5.00e-169	585.00
IUUC-Lpe-051501	Leersia perrieri	82.79	0.00e+00	775.00
IUUC-Loc-051736	Lepisosteus oculatus	43.19	6.00e-91	327.00
IUUC-Meu-056419	Macropus eugenii	46.22	2.00e-79	288.00
IUUC-Mtr-058139	Medicago truncatula	58.43	5.00e-176	610.00
IUUC-Mla-059028	Melampsora laricipopulina	40.71	2.00e-82	299.00
IUUC-Mvi-060533	Microbotryum violaceum	40.97	2.00e-83	302.00
IUUC-Mac-065643	Musa acuminata	74.52	0.00e+00	709.00
IUUC-Ont-071977	Oreochromis niloticus	42.07	2.00e-89	322.00
IUUC-Oba-075525	Oryza barthii	81.50	0.00e+00	796.00
IUUC-Obr-076468	Oryza brachyantha	81.43	0.00e+00	786.00
IUUC-Ogl-077395	Oryza glaberrima	81.50	0.00e+00	796.00
IUUC-Ogu-078730	Oryza glumaepatula	81.12	0.00e+00	792.00
IUUC-Oin-079797	Oryza indica	81.31	0.00e+00	793.00
IUUC-Olo-080539	Oryza longistaminata	81.13	0.00e+00	788.00
IUUC-Oni-082635	Oryza nivara	81.12	0.00e+00	791.00
IUUC-Opu-083733	Oryza punctata	81.50	0.00e+00	809.00
IUUC-Oru-084560	Oryza rufipogon	81.31	0.00e+00	793.00
IUUC-Osa-085463	Oryza sativa	81.31	0.00e+00	793.00
IUUC-Pop-099756	Populus trichocarpa	63.57	6.00e-173	599.00
IUUC-Ppe-101354	Prunus persica	64.78	3.00e-167	580.00
IUUC-Smo-108706	Selaginella moellendorffii	55.42	3.00e-129	454.00
IUUC-Sit-110158	Setaria italica	89.16	0.00e+00	839.00
IUUC-Sly-111569	Solanum lycopersicum	65.62	6.00e-169	586.00
IUUC-Stu-112403	Solanum tuberosum	65.16	2.00e-175	607.00
IUUC-Tru-118535	Takifugu rubripes	45.84	7.00e-95	340.00
IUUC-Tca-121165	Theobroma cacao	63.18	0.00e+00	625.00
IUUC-Tae-125874	Triticum aestivum	78.39	0.00e+00	806.00
IUUC-Tur-126078	Triticum urartu	78.63	0.00e+00	764.00
IUUC-Ttr-129047	Tursiops truncatus	44.53	4.00e-88	318.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence