iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sha-107487

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AEFK01219757

Gene Name

RNF4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSHAG00000007974.1	ENSSHAT00000009288.1	ENSSHAP00000009209.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	3.30e-08	34.1	136	181

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf......kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C+iC++ +       +  +++ CgHvf+ +Cl          +++ +CP+Cr
   Q: 136  CPICMDGYseilqsGRLIVSTKCGHVFCSQCLRDA------LRNASSCPTCR 181
           ********55554433366788**********666......89********8 PP

Organism

Sarcophilus harrisii

Protein Sequence
(Fasta)

RRDPNPTQRK RRGGTINSRQ SQKRERLGPT MEMTSEAEPI ELVESAGEEV VDLTCESTEP 60
VVVDLTHNDS VVFVEENRRQ RRNPRMSRGQ PDSCVLSSDD EETRDSDVYV TENASRESVV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGACGGGACC CAAATCCCAA GTCCTGTCTA TATCATTCCT GACAAGTAGT CAGGTAGACT 60
AGGGCTGTCA AACTCAAATA GTAAGAGGGG CAACTAAACT GTGTGTAAAG GATCCTTGCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005737--C:cytoplasm
GO:0016605--C:PML body
GO:0008270--F:zinc ion binding
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0090234--P:regulation of kinetochore assembly
GO:0090169--P:regulation of spindle assembly
GO:0046685--P:response to arsenic-containing substance

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000858	Aegilops tauschii	37.70	5.00e-11	61.20
IUUC-Aml-002206	Ailuropoda melanoleuca	70.00	5.00e-62	229.00
IUUC-Atr-002771	Amborella trichopoda	34.25	6.00e-11	60.80
IUUC-Apl-004120	Anas platyrhynchos	78.24	1.00e-75	275.00
IUUC-Aca-004236	Anolis carolinensis	68.62	3.00e-67	247.00
IUUC-Aly-005728	Arabidopsis lyrata	41.67	9.00e-11	59.70
IUUC-Ath-007366	Arabidopsis thaliana	40.98	8.00e-11	59.70
IUUC-Ame-011555	Astyanax mexicanus	55.90	8.00e-42	162.00
IUUC-Bta-012913	Bos taurus	68.25	6.00e-63	233.00
IUUC-Bdi-014655	Brachypodium distachyon	40.98	8.00e-11	60.50
IUUC-Bol-015811	Brassica oleracea	39.34	2.00e-10	58.20
IUUC-Bra-016890	Brassica rapa	38.60	2.00e-08	52.00
IUUC-Cja-019151	Callithrix jacchus	66.32	2.00e-59	221.00
IUUC-Cfa-020868	Canis familiaris	66.84	2.00e-61	228.00
IUUC-Cpo-022249	Cavia porcellus	66.49	6.00e-55	206.00
IUUC-Csa-024125	Chlorocebus sabaeus	68.25	2.00e-61	228.00
IUUC-Cin-025749	Ciona intestinalis	47.54	2.00e-15	75.90
IUUC-Csv-026318	Ciona savignyi	43.24	3.00e-15	74.30
IUUC-Dre-028145	Danio rerio	45.93	3.00e-36	144.00
IUUC-Dno-029605	Dasypus novemcinctus	70.74	2.00e-67	248.00
IUUC-Dor-030898	Dipodomys ordii	67.55	2.00e-64	238.00
IUUC-Dme-032177	Drosophila melanogaster	50.85	8.00e-13	67.40
IUUC-Ete-032694	Echinops telfairi	61.50	6.00e-53	199.00
IUUC-Eca-033443	Equus caballus	69.84	1.00e-61	228.00
IUUC-Eeu-034603	Erinaceus europaeus	71.15	3.00e-40	156.00
IUUC-Fca-035507	Felis catus	68.25	4.00e-59	220.00
IUUC-Fal-037382	Ficedula albicollis	75.13	1.00e-69	255.00
IUUC-Gmo-038960	Gadus morhua	40.54	8.00e-21	92.00
IUUC-Gga-040493	Gallus gallus	75.26	3.00e-75	273.00
IUUC-Gac-042194	Gasterosteus aculeatus	52.50	2.00e-39	155.00
IUUC-Gma-042666	Glycine max	37.70	2.00e-09	55.10
IUUC-Ggo-044726	Gorilla gorilla	68.25	5.00e-60	223.00
IUUC-Hsa-046212	Homo sapiens	68.25	5.00e-60	223.00
IUUC-Hvu-047337	Hordeum vulgare	39.34	2.00e-11	62.40
IUUC-Itr-047892	Ictidomys tridecemlineatus	68.42	5.00e-61	226.00
IUUC-Lpe-050920	Leersia perrieri	36.07	2.00e-10	58.90
IUUC-Loc-051907	Lepisosteus oculatus	50.62	1.00e-38	152.00
IUUC-Laf-054145	Loxodonta africana	68.04	1.00e-59	221.00
IUUC-Mcc-055689	Macaca mulatta	68.25	6.00e-60	223.00
IUUC-Meu-056654	Macropus eugenii	57.22	5.00e-49	186.00
IUUC-Mtr-058314	Medicago truncatula	41.94	2.00e-11	61.60
IUUC-Mga-059303	Meleagris gallopavo	76.17	2.00e-73	267.00
IUUC-Mmr-061355	Microcebus murinus	67.72	7.00e-60	223.00
IUUC-Mdo-062968	Monodelphis domestica	86.32	2.00e-87	314.00
IUUC-Mmu-064421	Mus musculus	69.43	8.00e-67	245.00
IUUC-Mac-064573	Musa acuminata	36.11	8.00e-12	63.90
IUUC-Mpu-066522	Mustela putorius furo	69.07	3.00e-62	230.00
IUUC-Mlu-067065	Myotis lucifugus	66.84	6.00e-60	223.00
IUUC-Nle-069198	Nomascus leucogenys	68.25	1.00e-59	222.00
IUUC-Opr-071141	Ochotona princeps	66.49	2.00e-63	234.00
IUUC-Oan-073341	Ornithorhynchus anatinus	72.03	2.00e-45	174.00
IUUC-Ocu-073787	Oryctolagus cuniculus	71.20	4.00e-69	253.00
IUUC-Oba-075460	Oryza barthii	34.67	3.00e-11	61.60
IUUC-Obr-076406	Oryza brachyantha	28.04	1.00e-10	60.50
IUUC-Ogl-077094	Oryza glaberrima	35.06	3.00e-11	61.60
IUUC-Ogu-078677	Oryza glumaepatula	34.67	3.00e-11	62.00
IUUC-Oin-079992	Oryza indica	35.06	3.00e-11	61.60
IUUC-Olo-080257	Oryza longistaminata	36.00	2.00e-11	62.40
IUUC-Ome-081943	Oryza meridionalis	35.14	3.00e-11	62.40
IUUC-Oni-082671	Oryza nivara	34.67	3.00e-11	61.60
IUUC-Opu-083644	Oryza punctata	35.14	4.00e-11	61.60
IUUC-Oru-084650	Oryza rufipogon	34.67	3.00e-11	61.60
IUUC-Osa-086110	Oryza sativa	35.06	3.00e-11	61.60
IUUC-Ola-086970	Oryzias latipes	41.09	2.00e-35	141.00
IUUC-Olu-087634	Ostreococcus lucimarinus	38.98	3.00e-11	60.80
IUUC-Oga-088242	Otolemur garnettii	70.00	3.00e-68	250.00
IUUC-Oar-089469	Ovis aries	70.10	1.00e-68	251.00
IUUC-Ptr-091254	Pan troglodytes	65.08	1.00e-55	209.00
IUUC-Pan-092919	Papio anubis	68.59	4.00e-61	226.00
IUUC-Psi-093929	Pelodiscus sinensis	76.80	2.00e-75	275.00
IUUC-Pma-094118	Petromyzon marinus	48.28	2.00e-22	96.30
IUUC-Ppa-095567	Physcomitrella patens	45.90	5.00e-12	64.30
IUUC-Pfo-097412	Poecilia formosa	50.62	1.00e-36	145.00
IUUC-Pab-098424	Pongo abelii	68.25	5.00e-60	223.00
IUUC-Pop-099570	Populus trichocarpa	35.00	1.00e-10	58.90
IUUC-Pca-100463	Procavia capensis	61.43	1.00e-30	125.00
IUUC-Ppe-101755	Prunus persica	41.94	2.00e-10	58.20
IUUC-Pva-102594	Pteropus vampyrus	66.19	7.00e-41	159.00
IUUC-Pgr-103450	Puccinia graminis	37.10	1.00e-05	43.90
IUUC-Rno-105460	Rattus norvegicus	65.64	2.00e-58	218.00
IUUC-Smo-108908	Selaginella moellendorffii	38.71	2.00e-08	52.00
IUUC-Sit-109959	Setaria italica	40.98	2.00e-06	46.60
IUUC-Stu-112694	Solanum tuberosum	40.32	5.00e-10	57.40
IUUC-Sar-113601	Sorex araneus	68.62	1.00e-61	228.00
IUUC-Sbi-114398	Sorghum bicolor	40.98	1.00e-05	43.10
IUUC-Ssc-115911	Sus scrofa	70.37	7.00e-62	229.00
IUUC-Tgu-117264	Taeniopygia guttata	72.63	2.00e-70	258.00
IUUC-Tru-117663	Takifugu rubripes	51.20	4.00e-40	156.00
IUUC-Tsy-118883	Tarsius syrichta	65.54	1.00e-48	185.00
IUUC-Tae-123990	Triticum aestivum	38.71	7.00e-07	47.00
IUUC-Tur-126363	Triticum urartu	37.70	8.00e-11	60.80
IUUC-Ttr-128950	Tursiops truncatus	54.31	3.00e-53	201.00
IUUC-Vvi-130833	Vitis vinifera	45.16	9.00e-12	63.50
IUUC-Xtr-132879	Xenopus tropicalis	66.23	1.00e-48	185.00
IUUC-Xma-133319	Xiphophorus maculatus	51.02	2.00e-34	137.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence