iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-113802

UUCD1 version

UUC-SoB-00572

Ensembl Protein ID

Sb03g012810.1

UniProt Accession

C5XIT4; C5XIT4_SORBI

Genbank Protein ID

EES02868.1; KXG32391.1

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000762; CM000762

Gene Name

SORBI_003G148000

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb03g012810	Sb03g012810.1	Sb03g012810.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	8.60e-06	26.5	250	306
E3 activity/RING/RING	4.40e-09	37.5	254	295

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 4    eeflCpIslelMrdPvvlpsGitydrssIekwl..asggktcPvtrqplteedlvPn 58
           + f C I l++ ++Pvv+p+G+ +   ++ +wl   s +++cPv++ ++ e +++P 
   Q: 250  SSFECNICLDPAKEPVVTPCGHLFCWPCLYQWLhaHSTNSECPVCKGEVLEVNVTPI 306
           68*******************************65455559******9999999996 PP

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C iCl++ k+ p+v+pCgH+f+  Cl++w    +  s++  CP+C+
   Q: 254  CNICLDPAKE-PVVTPCGHLFCWPCLYQW---LHAHSTNSECPVCK 295
           99******99.999***************...334788889****7 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MAGEEAPEGS GTRRRMDLNL YLGLPPLPRP PVWLDTTMIS PTLMPNSTGA APEAPRTGEP 60
EESLAPVAAA YSPLNALSTP EEHPMLDPIV YSWLDGNSTD GEEDTDASEP GPVDGANVSR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCGAGTCTCC TCTCGTTCTT CAGCAGGGCC GGCTTCCGCC CCGCCCTCCA ACCCAGCCCC 60
AGCGGCGCCG CCCACAGCCC CAGGTCCCGC CGCCCGACCC CAGCGCCGCC TCCAGTCGTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0036513--C:Derlin-1 retrotranslocation complex
GO:1904264--F:ubiquitin protein ligase activity involved in ERAD pathway
GO:0044390--F:ubiquitin-like protein conjugating enzyme binding
GO:0008270--F:zinc ion binding
GO:0071712--P:ER-associated misfolded protein catabolic process
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG

sbi:SORBI_03g012810

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001144	Aegilops tauschii	58.69	6.00e-118	416.00
IUUC-Ago-007769	Ashbya gossypii	33.96	1.00e-08	52.40
IUUC-Bdi-014950	Brachypodium distachyon	49.90	5.00e-93	333.00
IUUC-Dno-029843	Dasypus novemcinctus	54.43	2.00e-23	100.00
IUUC-Hvu-047148	Hordeum vulgare	56.76	3.00e-112	397.00
IUUC-Lpe-051681	Leersia perrieri	44.91	4.00e-69	254.00
IUUC-Mvi-060316	Microbotryum violaceum	50.00	2.00e-15	74.70
IUUC-Mac-064442	Musa acuminata	38.71	1.00e-45	176.00
IUUC-Ont-072482	Oreochromis niloticus	50.00	2.00e-23	101.00
IUUC-Oba-075500	Oryza barthii	55.86	2.00e-71	262.00
IUUC-Obr-076049	Oryza brachyantha	59.04	2.00e-68	252.00
IUUC-Ogl-076975	Oryza glaberrima	55.86	2.00e-71	262.00
IUUC-Ogu-078102	Oryza glumaepatula	56.17	7.00e-72	263.00
IUUC-Oin-079384	Oryza indica	56.17	5.00e-72	263.00
IUUC-Olo-080296	Oryza longistaminata	53.09	7.00e-62	229.00
IUUC-Ome-081120	Oryza meridionalis	54.01	3.00e-65	241.00
IUUC-Oni-082837	Oryza nivara	56.17	5.00e-72	263.00
IUUC-Opu-083935	Oryza punctata	61.36	6.00e-69	253.00
IUUC-Oru-084846	Oryza rufipogon	55.86	4.00e-71	261.00
IUUC-Osa-085750	Oryza sativa	55.86	6.00e-71	260.00
IUUC-Oar-090284	Ovis aries	53.16	3.00e-23	100.00
IUUC-Pfo-096818	Poecilia formosa	50.00	2.00e-23	101.00
IUUC-Sit-110771	Setaria italica	77.98	8.00e-164	569.00
IUUC-Tae-125318	Triticum aestivum	58.69	8.00e-118	416.00
IUUC-Xma-134225	Xiphophorus maculatus	50.00	2.00e-23	101.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence