iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007143

UUCD1 version

UUC-ArT-00642

Ensembl Protein ID

AT3G58030.4

UniProt Accession

Q8RXF2; Q8RXF2_ARATH

Genbank Protein ID

AAL91178.1; AAP31929.1; AEE79731.1; AEE79732.1; AEE79733.1; AEE79734.1

Protein Name

At3g58030; Putative uncharacterized protein At3g58030; RING/U-box superfamily protein

Genbank Nucleotide ID

AY081289; BT006585; CP002686; CP002686; CP002686; CP002686

Gene Name

At3g58030

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G58030	AT3G58030.4	AT3G58030.4

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
Mentha
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	6.70e-07	30.2	136	191
E3 activity/RING/RING	1.20e-06	29.8	139	179

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 5    eflCpIslelMrdPvvlpsGitydrssIekwl.asggktcPvtrqplteedlvPnl 59
           +f C I l+l ++Pv +++G+ y   ++ +wl  s+ k+cPv++ ++t+++++P +
   Q: 136  FFDCNICLDLSKEPVLTCCGHLYCWPCLYQWLqISDAKECPVCKGEVTSKTVTPIY 191
           79******************************5455558**************975 PP

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C iCl+  k+ p+++ CgH+++  Cl++w     + s +  CP+C+
   Q: 139  CNICLDLSKE-PVLTCCGHLYCWPCLYQW----LQISDAKECPVCK 179
           99******99.999***************....8899999*****7 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MGEELADTMN LDLNLGPGPE SDLQPAPNET VNLADWTNDP PERSSEAVTR IRTRHRTRFR 60
QLNLPIPVLS ETHTMAIELN QLMGNSVNRA AMQTGEGSER GNEDLKMCEN GDGALGDGVL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGTCCTTCTT ATCATTATAA TCATCTTTTT AATCAAAAAA GGTTTGCACA TAACATAAGC 60
TTTTTTCTTT CTCTCTTAAT CAGAAAACAA TCTTGTCTCA CAAAAATATA ATTAATGATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0036513--C:Derlin-1 retrotranslocation complex
GO:1904264--F:ubiquitin protein ligase activity involved in ERAD pathway
GO:0044390--F:ubiquitin-like protein conjugating enzyme binding
GO:0008270--F:zinc ion binding
GO:0071712--P:ER-associated misfolded protein catabolic process
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG

ath:AT3G58030

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000500	Aegilops tauschii	49.14	1.00e-31	129.00
IUUC-Atr-002855	Amborella trichopoda	55.75	5.00e-31	128.00
IUUC-Aly-006126	Arabidopsis lyrata	97.50	0.00e+00	758.00
IUUC-Ago-007781	Ashbya gossypii	43.75	2.00e-08	52.80
IUUC-Bdi-014417	Brachypodium distachyon	52.94	8.00e-32	130.00
IUUC-Bol-015310	Brassica oleracea	91.52	0.00e+00	703.00
IUUC-Bra-017049	Brassica rapa	91.27	0.00e+00	702.00
IUUC-Gma-042913	Glycine max	52.94	2.00e-100	358.00
IUUC-Hvu-047679	Hordeum vulgare	48.28	3.00e-31	128.00
IUUC-Lpe-051486	Leersia perrieri	49.57	2.00e-32	132.00
IUUC-Mtr-057874	Medicago truncatula	50.42	5.00e-100	357.00
IUUC-Mac-064953	Musa acuminata	51.35	2.00e-31	129.00
IUUC-Oba-075745	Oryza barthii	51.96	1.00e-30	127.00
IUUC-Obr-076527	Oryza brachyantha	45.45	8.00e-31	127.00
IUUC-Ogl-077431	Oryza glaberrima	51.96	1.00e-30	127.00
IUUC-Ogu-078666	Oryza glumaepatula	51.96	1.00e-30	127.00
IUUC-Oin-079645	Oryza indica	51.96	1.00e-30	127.00
IUUC-Olo-080972	Oryza longistaminata	51.96	1.00e-30	127.00
IUUC-Ome-081574	Oryza meridionalis	45.83	3.00e-30	125.00
IUUC-Oni-082132	Oryza nivara	51.96	1.00e-30	127.00
IUUC-Opu-083673	Oryza punctata	51.96	9.00e-30	125.00
IUUC-Oru-084822	Oryza rufipogon	51.96	1.00e-30	127.00
IUUC-Osa-085696	Oryza sativa	51.96	1.00e-30	127.00
IUUC-Olu-087623	Ostreococcus lucimarinus	47.95	3.00e-19	87.00
IUUC-Pma-094260	Petromyzon marinus	28.57	4.00e-08	52.40
IUUC-Ppa-095532	Physcomitrella patens	59.42	2.00e-24	106.00
IUUC-Pop-099819	Populus trichocarpa	54.83	3.00e-110	391.00
IUUC-Ppe-101193	Prunus persica	56.37	7.00e-92	329.00
IUUC-Sit-110715	Setaria italica	47.50	1.00e-31	130.00
IUUC-Sly-111147	Solanum lycopersicum	48.63	2.00e-86	312.00
IUUC-Stu-112419	Solanum tuberosum	48.21	4.00e-89	320.00
IUUC-Sbi-114164	Sorghum bicolor	43.97	1.00e-31	130.00
IUUC-Tca-121427	Theobroma cacao	53.69	2.00e-97	348.00
IUUC-Tae-125026	Triticum aestivum	47.33	3.00e-32	132.00
IUUC-Tur-126535	Triticum urartu	50.45	2.00e-31	129.00
IUUC-Vvi-131195	Vitis vinifera	49.65	1.00e-83	302.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence