iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007457

UUCD1 version

UUC-ArT-01524

Ensembl Protein ID

AT3G07360.1

UniProt Accession

Q9SRT0; PUB9_ARATH

Genbank Protein ID

AAF02146.1; AEE74532.1; AAL91644.1

Protein Name

U-box domain-containing protein 9; Plant U-box protein 9; RING-type E3 ubiquitin transferase PUB9

Genbank Nucleotide ID

AC009853; CP002686; AY075636

Gene Name

PUB9; At3g07360; F21O3.7

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G07360	AT3G07360.1	AT3G07360.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
Mentha
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/U-box	U-box	14657406; 18552232

Classification

Family	E-value	Score	Start	End
E3 activity/RING/U-box	3.20e-32	111.3	74	145

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceens 73
           +peef+Cp+s+elMrdPvvl+sG+tyd+  I+kwl+sg++tcP+t+q l ++ l+Pnl +r++i++wc++n+
   Q: 74   CPEEFRCPLSNELMRDPVVLASGQTYDKLFIQKWLSSGNRTCPKTQQVLPHTALTPNLLIREMISKWCKKNG 145
           79*******************************************************************997 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as an E3 ubiquitin ligase (By similarity). May be involved in the abscisic acid-mediated signaling pathway, at least during germination.

Protein Sequence
(Fasta)

MAKTGVFDSD PTAIAKAKEL KREMKKLLIK IDDEDDLGVQ TIDQLQDALS ALREATMRKM 60
AKSSSLEMLE TVSCPEEFRC PLSNELMRDP VVLASGQTYD KLFIQKWLSS GNRTCPKTQQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAATAATGAC GTGGCAAATT CGGTGCAGGC CACAATTCTA TTATAGTGAA GCACTAGAGT 60
ACAACAACAA CACTTGTGCC TCTTCTTCTC TCTTCCTCAT ATTTATTACT CTCTCTTTCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0938--Abscisic acid signaling pathway
KW-0025--Alternative splicing
KW-1003--Cell membrane
KW-0181--Complete proteome
KW-0472--Membrane
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0005886--C:plasma membrane
GO:0070696--F:transmembrane receptor protein serine/threonine kinase binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0009738--P:abscisic acid-activated signaling pathway
GO:0071215--P:cellular response to abscisic acid stimulus
GO:0016567--P:protein ubiquitination

KEGG

ath:AT3G07360

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000164	Aegilops tauschii	45.35	1.00e-87	316.00
IUUC-Aly-006420	Arabidopsis lyrata	97.61	0.00e+00	916.00
IUUC-Bdi-014069	Brachypodium distachyon	51.16	1.00e-106	379.00
IUUC-Bol-015764	Brassica oleracea	88.55	0.00e+00	806.00
IUUC-Bra-017759	Brassica rapa	87.69	0.00e+00	769.00
IUUC-Gma-043804	Glycine max	59.57	1.00e-145	508.00
IUUC-Hvu-047411	Hordeum vulgare	50.00	5.00e-86	310.00
IUUC-Lpe-050825	Leersia perrieri	50.64	1.00e-107	382.00
IUUC-Mtr-057877	Medicago truncatula	56.68	2.00e-142	498.00
IUUC-Mac-065616	Musa acuminata	51.70	3.00e-110	391.00
IUUC-Oba-075311	Oryza barthii	51.46	5.00e-103	367.00
IUUC-Obr-076232	Oryza brachyantha	51.07	3.00e-103	367.00
IUUC-Ogl-077647	Oryza glaberrima	51.27	2.00e-108	385.00
IUUC-Ogu-078448	Oryza glumaepatula	51.27	6.00e-109	387.00
IUUC-Oin-079693	Oryza indica	51.46	7.00e-103	366.00
IUUC-Olo-080462	Oryza longistaminata	51.67	1.00e-108	385.00
IUUC-Ome-081796	Oryza meridionalis	51.15	1.00e-107	382.00
IUUC-Oni-082158	Oryza nivara	51.27	9.00e-109	386.00
IUUC-Opu-084131	Oryza punctata	51.93	4.00e-109	387.00
IUUC-Oru-084335	Oryza rufipogon	51.27	9.00e-109	386.00
IUUC-Osa-085556	Oryza sativa	51.27	9.00e-109	386.00
IUUC-Pop-099806	Populus trichocarpa	63.68	2.00e-165	574.00
IUUC-Ppe-101662	Prunus persica	63.71	8.00e-163	565.00
IUUC-Sit-110812	Setaria italica	51.28	3.00e-105	374.00
IUUC-Sly-110911	Solanum lycopersicum	59.83	1.00e-155	541.00
IUUC-Stu-112732	Solanum tuberosum	61.17	3.00e-157	547.00
IUUC-Sbi-114814	Sorghum bicolor	51.28	8.00e-107	379.00
IUUC-Tca-121080	Theobroma cacao	65.46	7.00e-173	599.00
IUUC-Tae-123657	Triticum aestivum	49.35	2.00e-93	335.00
IUUC-Tur-126060	Triticum urartu	45.15	7.00e-89	320.00
IUUC-Vvi-131168	Vitis vinifera	61.34	6.00e-160	556.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence