iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sbi-114379

Ensembl Protein ID

Sb01g008160.1

UniProt Accession

C5X153; C5X153_SORBI

Genbank Protein ID

EER93460.1

Protein Name

PHD finger protein ING

Genbank Nucleotide ID

CM000760

Gene Name

SORBI_001G090400

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb01g008160	Sb01g008160.1	Sb01g008160.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	2.30e-09	38.1	200	249

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCek..Cr..ewfHpaClklsveeelpnsekwiCpkCr 52
           ++C +C++ + ++  ++ C++  C+  ewfH++C++l+  e++ +  kw+Cp Cr
   Q: 200  TYC-ICHQVSYGD--MIACDNenCEggEWFHYTCVGLT-PETRFKG-KWFCPTCR 249
           69*.********9..*****999*999***********.4444444.4******8 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MAIARTGVYV DDYLEYSSTL AGDLQRILST MRELDDRAHG IMGQTKEQIK YILGVSSHGY 60
DRSNMDDDES ERMKKDIEAS QDNALNLCTE KVLLARQAYD LIESHIKRLD EDLGQFAEDL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATCGAGGCAT CGATCCATCG AACCCTGCCC GGAGACGCGG AATTTCGGGA GCAATCATAG 60
ACACTAGACA GGCATGGCGA TCGCTCGGAC CGGCGTGTAC GTCGACGACT ACCTCGAGTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0156--Chromatin regulator
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR028652--ING2_plant-typ
IPR028651--ING_fam
IPR024610--ING_N_histone_binding
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50016--ZF_PHD_2

Pfam

PF12998--ING
PF00628--PHD

SMART

SM01408--ING
SM00249--PHD

Gene Ontology

GO:0005634--C:nucleus
GO:0008270--F:zinc ion binding
GO:0016569--P:covalent chromatin modification

KEGG

sbi:SORBI_01g008160

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002435	Amborella trichopoda	69.32	2.00e-94	337.00
IUUC-Ath-006578	Arabidopsis thaliana	64.62	7.00e-90	322.00
IUUC-Bdi-014508	Brachypodium distachyon	84.31	6.00e-126	442.00
IUUC-Bol-015751	Brassica oleracea	65.12	4.00e-98	350.00
IUUC-Bra-017962	Brassica rapa	65.13	2.00e-98	351.00
IUUC-Csv-026288	Ciona savignyi	29.20	8.00e-29	119.00
IUUC-Dse-031323	Dothistroma septosporum	48.05	3.00e-17	83.20
IUUC-Gma-044224	Glycine max	63.12	1.00e-95	341.00
IUUC-Hvu-047275	Hordeum vulgare	83.33	5.00e-126	442.00
IUUC-Lpe-051512	Leersia perrieri	87.80	2.00e-124	437.00
IUUC-Mtr-058288	Medicago truncatula	65.78	1.00e-100	358.00
IUUC-Mac-065671	Musa acuminata	72.94	5.00e-112	395.00
IUUC-Obr-076822	Oryza brachyantha	89.72	5.00e-137	478.00
IUUC-Ogl-077432	Oryza glaberrima	89.33	7.00e-137	478.00
IUUC-Osa-085802	Oryza sativa	89.33	7.00e-137	478.00
IUUC-Olu-087851	Ostreococcus lucimarinus	60.38	2.00e-17	81.60
IUUC-Ppa-096009	Physcomitrella patens	58.62	7.00e-81	292.00
IUUC-Pop-099544	Populus trichocarpa	64.66	9.00e-87	312.00
IUUC-Ppe-101698	Prunus persica	61.54	7.00e-82	295.00
IUUC-Pte-104284	Pyrenophora teres	55.17	3.00e-15	76.30
IUUC-Pyt-104787	Pyrenophora triticirepentis	56.90	2.00e-15	77.00
IUUC-Spo-108245	Schizosaccharomyces pombe	42.37	1.00e-05	43.50
IUUC-Smo-108678	Selaginella moellendorffii	61.26	1.00e-87	315.00
IUUC-Sit-110189	Setaria italica	95.63	1.00e-137	480.00
IUUC-Sly-111209	Solanum lycopersicum	68.48	2.00e-90	324.00
IUUC-Stu-112762	Solanum tuberosum	68.48	3.00e-90	323.00
IUUC-Tca-121271	Theobroma cacao	66.80	6.00e-91	326.00
IUUC-Tae-122798	Triticum aestivum	83.72	3.00e-126	443.00
IUUC-Vvi-131583	Vitis vinifera	63.92	2.00e-98	350.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence