iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sha-106792

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AEFK01232922

Gene Name

RLIM

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSHAG00000009097.1	ENSSHAT00000010631.1	ENSSHAP00000010538.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	3.70e-07	30.7	562	603

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C++C +++ +g  ++ lpC H +h +C+ +w       s + +CP+Cr
   Q: 562  CSVCITEYTEGnkLRKLPCSHEYHVHCIDRW------LSENSTCPICR 603
           9*******5554499****************......**********8 PP

Organism

Sarcophilus harrisii

Protein Sequence
(Fasta)

MDNSDSNDKG NVDQSESQRR RQLDRLDREE AFYHFVNNLS EEDYRLMRDN NLLGTPGEIT 60
EEELLRRLHQ IKEGPPQQNN DENRESTDDV SNSDSIIDWL NSVRQTGNTT RSGQRGNQSW 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATTTAGAACT TGGAGGGAAG AGAAGCAAAG TGCACAGTGT GTTGTGGCAG CTGAGTGATG 60
CTAAGGTTAC CTTGACTTCT TATTTTCAAA GGTAATTTCT TCCAGACTTT ACAAATATGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005829--C:cytosol
GO:0005654--C:nucleoplasm
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043433--P:negative regulation of sequence-specific DNA binding transcription factor activity
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter
GO:0060816--P:random inactivation of X chromosome
GO:1900095--P:regulation of dosage compensation by inactivation of X chromosome
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

shr:100933776

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000590	Aegilops tauschii	37.84	8.00e-14	70.50
IUUC-Aml-001407	Ailuropoda melanoleuca	75.00	1.00e-149	523.00
IUUC-Atr-002539	Amborella trichopoda	41.54	1.00e-14	74.30
IUUC-Apl-003969	Anas platyrhynchos	74.76	0.00e+00	801.00
IUUC-Aca-005377	Anolis carolinensis	72.35	1.00e-153	536.00
IUUC-Ath-007543	Arabidopsis thaliana	47.62	2.00e-15	74.70
IUUC-Ame-011097	Astyanax mexicanus	59.32	5.00e-114	404.00
IUUC-Bta-013113	Bos taurus	75.00	3.00e-156	545.00
IUUC-Bdi-014392	Brachypodium distachyon	47.06	2.00e-14	72.40
IUUC-Bol-015085	Brassica oleracea	43.01	1.00e-16	80.10
IUUC-Bra-017624	Brassica rapa	43.01	2.00e-16	80.10
IUUC-Cja-018860	Callithrix jacchus	73.21	4.00e-148	518.00
IUUC-Cfa-020358	Canis familiaris	74.76	4.00e-151	528.00
IUUC-Cpo-021533	Cavia porcellus	72.11	2.00e-134	471.00
IUUC-Cre-022755	Chlamydomonas reinhardtii	44.68	1.00e-13	67.40
IUUC-Csa-023242	Chlorocebus sabaeus	69.37	5.00e-137	481.00
IUUC-Cho-024536	Choloepus hoffmanni	67.38	1.00e-121	429.00
IUUC-Dre-027894	Danio rerio	55.22	3.00e-167	581.00
IUUC-Dno-029606	Dasypus novemcinctus	74.15	5.00e-159	554.00
IUUC-Dor-031042	Dipodomys ordii	67.19	2.00e-130	459.00
IUUC-Ete-033099	Echinops telfairi	71.95	7.00e-143	500.00
IUUC-Eca-033976	Equus caballus	74.38	3.00e-161	561.00
IUUC-Eeu-034964	Erinaceus europaeus	65.06	3.00e-110	392.00
IUUC-Fca-035662	Felis catus	75.24	2.00e-150	525.00
IUUC-Fal-036996	Ficedula albicollis	80.00	6.00e-150	523.00
IUUC-Gmo-039207	Gadus morhua	72.27	4.00e-45	175.00
IUUC-Gga-040816	Gallus gallus	76.77	0.00e+00	805.00
IUUC-Gma-044353	Glycine max	47.37	1.00e-16	80.50
IUUC-Ggo-044754	Gorilla gorilla	73.44	3.00e-151	528.00
IUUC-Hsa-045776	Homo sapiens	73.44	3.00e-151	528.00
IUUC-Hvu-047313	Hordeum vulgare	40.48	9.00e-15	73.20
IUUC-Itr-048044	Ictidomys tridecemlineatus	74.38	1.00e-156	546.00
IUUC-Lch-050178	Latimeria chalumnae	63.07	3.00e-179	621.00
IUUC-Lpe-051680	Leersia perrieri	44.16	1.00e-14	74.70
IUUC-Loc-052124	Lepisosteus oculatus	58.37	4.00e-156	545.00
IUUC-Laf-054328	Loxodonta africana	72.11	7.00e-150	523.00
IUUC-Mcc-054739	Macaca mulatta	73.21	1.00e-150	526.00
IUUC-Meu-056359	Macropus eugenii	87.82	0.00e+00	880.00
IUUC-Mtr-058167	Medicago truncatula	47.37	1.00e-15	77.40
IUUC-Mga-059838	Meleagris gallopavo	76.29	0.00e+00	805.00
IUUC-Mmr-060608	Microcebus murinus	70.65	0.00e+00	721.00
IUUC-Mdo-061961	Monodelphis domestica	88.99	0.00e+00	659.00
IUUC-Mmu-064278	Mus musculus	74.29	2.00e-135	475.00
IUUC-Mac-065396	Musa acuminata	44.16	3.00e-15	75.50
IUUC-Mpu-066258	Mustela putorius furo	74.92	2.00e-121	429.00
IUUC-Mlu-066930	Myotis lucifugus	76.89	3.00e-161	561.00
IUUC-Nle-069311	Nomascus leucogenys	73.21	1.00e-150	526.00
IUUC-Opr-071124	Ochotona princeps	77.30	7.00e-68	251.00
IUUC-Ont-071511	Oreochromis niloticus	84.11	1.00e-54	207.00
IUUC-Oan-073036	Ornithorhynchus anatinus	74.47	2.00e-141	495.00
IUUC-Ocu-073795	Oryctolagus cuniculus	70.97	0.00e+00	674.00
IUUC-Oba-075403	Oryza barthii	44.16	9.00e-15	74.70
IUUC-Obr-076503	Oryza brachyantha	44.16	1.00e-14	73.90
IUUC-Ogl-077574	Oryza glaberrima	44.16	9.00e-15	74.70
IUUC-Ogu-077986	Oryza glumaepatula	44.16	9.00e-15	74.70
IUUC-Oin-079091	Oryza indica	44.16	8.00e-15	74.70
IUUC-Olo-080996	Oryza longistaminata	38.30	3.00e-14	72.40
IUUC-Ome-081627	Oryza meridionalis	44.16	9.00e-15	74.70
IUUC-Oni-082260	Oryza nivara	44.16	9.00e-15	74.70
IUUC-Opu-083578	Oryza punctata	44.16	9.00e-15	74.70
IUUC-Oru-084794	Oryza rufipogon	44.16	9.00e-15	74.70
IUUC-Osa-085348	Oryza sativa	44.16	9.00e-15	74.70
IUUC-Olu-087781	Ostreococcus lucimarinus	46.15	4.00e-13	67.00
IUUC-Oga-088022	Otolemur garnettii	76.21	1.00e-162	566.00
IUUC-Oar-089348	Ovis aries	74.76	1.00e-154	539.00
IUUC-Ptr-090604	Pan troglodytes	73.21	1.00e-150	526.00
IUUC-Pan-092322	Papio anubis	73.21	1.00e-150	526.00
IUUC-Psi-093936	Pelodiscus sinensis	72.90	0.00e+00	747.00
IUUC-Ppa-095197	Physcomitrella patens	45.21	5.00e-16	79.30
IUUC-Pfo-096616	Poecilia formosa	89.13	2.00e-49	190.00
IUUC-Pab-098671	Pongo abelii	73.21	1.00e-150	526.00
IUUC-Pop-099808	Populus trichocarpa	44.59	2.00e-15	76.60
IUUC-Pca-100263	Procavia capensis	73.08	8.00e-146	510.00
IUUC-Ppe-101995	Prunus persica	45.21	4.00e-15	75.50
IUUC-Pva-102709	Pteropus vampyrus	71.70	2.00e-142	499.00
IUUC-Ptt-103976	Puccinia triticina	43.75	2.00e-10	58.90
IUUC-Rno-105759	Rattus norvegicus	75.71	8.00e-139	487.00
IUUC-Smo-109572	Selaginella moellendorffii	45.16	7.00e-16	77.00
IUUC-Sit-109852	Setaria italica	44.16	1.00e-14	74.30
IUUC-Sly-111747	Solanum lycopersicum	62.86	2.00e-12	66.60
IUUC-Stu-112609	Solanum tuberosum	45.83	5.00e-16	78.20
IUUC-Sar-113271	Sorex araneus	67.27	3.00e-132	465.00
IUUC-Sbi-114435	Sorghum bicolor	44.16	1.00e-14	74.30
IUUC-Ssc-115738	Sus scrofa	75.00	3.00e-156	545.00
IUUC-Tgu-117205	Taeniopygia guttata	75.52	0.00e+00	775.00
IUUC-Tru-118123	Takifugu rubripes	85.71	3.00e-54	206.00
IUUC-Tsy-119421	Tarsius syrichta	74.11	3.00e-163	568.00
IUUC-Tca-121654	Theobroma cacao	37.78	1.00e-15	76.30
IUUC-Tae-123264	Triticum aestivum	34.31	1.00e-15	77.80
IUUC-Tur-126084	Triticum urartu	48.89	2.00e-13	72.00
IUUC-Tbe-127543	Tupaia belangeri	73.18	0.00e+00	776.00
IUUC-Vpa-130058	Vicugna pacos	75.47	2.00e-150	525.00
IUUC-Vvi-131093	Vitis vinifera	44.74	1.00e-15	77.00
IUUC-Xtr-132663	Xenopus tropicalis	60.53	1.00e-103	370.00
IUUC-Yli-134448	Yarrowia lipolytica	34.12	4.00e-10	57.40

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence