iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114428

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000763

Gene Name

SORBI_004G246700

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb04g028660	Sb04g028660.1	Sb04g028660.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	7.70e-08	33.6	315	356

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C++Cl++++dg  +  lpC+H+fh +C+ kw       + +++CPlC+
   Q: 315  CCVCLSSYEDGaeLSALPCNHHFHWTCITKW------LRMNATCPLCK 356
           ********88755677***************......**********7 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MEAAATSPSP EQPLLRPPSP PPNPRADARS GTPASPSPSA ARPSRLAALI GRAAGRRGPS 60
MLVRETAALQ LQRRRADWAH SRPVVALDIA WNVAFAAAAA AVLASSAEES PVKPLRLWLV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GACCCCGAGA GAGAGACCGG GCTAGGTGTG GTGACCCAAA TGGAGGCGGC CGCCACGTCG 60
CCGTCGCCGG AGCAGCCGCT GCTCCGGCCC CCATCCCCGC CGCCGAATCC CCGCGCCGAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

sbi:SORBI_04g028660

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006309	Arabidopsis lyrata	58.57	2.00e-90	324.00
IUUC-Ath-007135	Arabidopsis thaliana	58.75	4.00e-91	327.00
IUUC-Bdi-014419	Brachypodium distachyon	79.35	2.00e-95	341.00
IUUC-Bol-015102	Brassica oleracea	61.37	3.00e-85	307.00
IUUC-Bra-017166	Brassica rapa	59.57	2.00e-82	298.00
IUUC-Gma-042852	Glycine max	61.41	9.00e-76	276.00
IUUC-Hvu-047330	Hordeum vulgare	84.54	6.00e-77	278.00
IUUC-Lpe-050934	Leersia perrieri	72.93	1.00e-117	415.00
IUUC-Lma-053120	Leptosphaeria maculans	50.00	2.00e-10	60.50
IUUC-Mtr-058387	Medicago truncatula	58.41	8.00e-77	279.00
IUUC-Mac-064512	Musa acuminata	66.67	2.00e-104	370.00
IUUC-Oba-075784	Oryza barthii	80.77	1.00e-99	354.00
IUUC-Obr-076831	Oryza brachyantha	77.31	3.00e-100	356.00
IUUC-Ogu-077960	Oryza glumaepatula	69.97	4.00e-113	400.00
IUUC-Oin-079107	Oryza indica	69.25	4.00e-107	380.00
IUUC-Olo-080835	Oryza longistaminata	64.07	7.00e-88	316.00
IUUC-Ome-081564	Oryza meridionalis	80.12	5.00e-123	433.00
IUUC-Oni-082731	Oryza nivara	69.97	9.00e-113	399.00
IUUC-Opu-083749	Oryza punctata	81.23	5.00e-115	406.00
IUUC-Oru-084835	Oryza rufipogon	69.97	9.00e-113	399.00
IUUC-Pop-098913	Populus trichocarpa	58.31	1.00e-87	315.00
IUUC-Ppe-101978	Prunus persica	59.88	3.00e-90	324.00
IUUC-Ptt-103787	Puccinia triticina	45.65	5.00e-10	57.00
IUUC-Sit-110199	Setaria italica	92.21	3.00e-128	450.00
IUUC-Sly-110887	Solanum lycopersicum	57.62	3.00e-86	311.00
IUUC-Stu-112563	Solanum tuberosum	56.95	1.00e-86	311.00
IUUC-Tca-121328	Theobroma cacao	60.13	1.00e-73	268.00
IUUC-Tae-123132	Triticum aestivum	77.02	7.00e-97	346.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence