iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Oga-088243

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AAQR03081574

Gene Name

RFWD3

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSOGAG00000013944.2	ENSOGAT00000013948.2	ENSOGAP00000012483.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	8.10e-10	38.6	477	515

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDlrtgvllk 37
           H   +++laf  ++ +ll+s+s D+tik+ +l t+++++
   Q: 477  HGKQIRGLAFnnPSkGLLLSASLDNTIKLTSLETNTVVQ 515
           8889******99778*************98888877766 PP

Organism

Otolemur garnettii

Protein Sequence
(Fasta)

MAHESSVEHD LEVQLDRYAM ELPPVEMASS QGILPLLRPV PTEQVNSQGL PLLLQPAPQM 60
SIDLTEEEEL SVQESVETSN PGYSEEQRQG SGAAHIIHAS AVDSMSSFIS GLQRLHGMLE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCTCATG AATCATCAGT GGAACATGAT CTTGAAGTGC AGTTAGATCG CTATGCTATG 60
GAACTGCCAC CTGTGGAAAT GGCCAGCAGC CAGGGTATCT TGCCTCTACT CCGACCTGTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING
SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0035861--C:site of double-strand break
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0031571--P:mitotic G1 DNA damage checkpoint
GO:2000001--P:regulation of DNA damage checkpoint
GO:0010212--P:response to ionizing radiation

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000929	Aegilops tauschii	24.22	6.00e-18	85.50
IUUC-Aml-001188	Ailuropoda melanoleuca	79.13	0.00e+00	1093.00
IUUC-Atr-003034	Amborella trichopoda	28.34	1.00e-18	86.70
IUUC-Apl-003182	Anas platyrhynchos	70.23	0.00e+00	724.00
IUUC-Aca-004619	Anolis carolinensis	70.33	0.00e+00	748.00
IUUC-Aly-006391	Arabidopsis lyrata	26.32	4.00e-32	132.00
IUUC-Ath-007300	Arabidopsis thaliana	25.96	9.00e-29	121.00
IUUC-Ame-010890	Astyanax mexicanus	61.13	0.00e+00	637.00
IUUC-Bta-013051	Bos taurus	67.77	0.00e+00	1004.00
IUUC-Bdi-014519	Brachypodium distachyon	26.73	1.00e-20	94.40
IUUC-Bol-015271	Brassica oleracea	29.76	2.00e-31	130.00
IUUC-Bra-017931	Brassica rapa	28.21	2.00e-31	130.00
IUUC-Cja-019240	Callithrix jacchus	76.55	0.00e+00	1071.00
IUUC-Cfa-021010	Canis familiaris	75.45	0.00e+00	1061.00
IUUC-Cpo-022308	Cavia porcellus	71.51	0.00e+00	960.00
IUUC-Csa-023501	Chlorocebus sabaeus	74.14	0.00e+00	1094.00
IUUC-Cho-024900	Choloepus hoffmanni	67.32	0.00e+00	966.00
IUUC-Cin-025403	Ciona intestinalis	36.85	1.00e-95	344.00
IUUC-Csv-025819	Ciona savignyi	37.89	2.00e-45	175.00
IUUC-Cme-027123	Cyanidioschyzon merolae	24.67	4.00e-19	89.70
IUUC-Dre-028354	Danio rerio	58.49	8.00e-168	583.00
IUUC-Dno-029400	Dasypus novemcinctus	74.61	0.00e+00	1046.00
IUUC-Dor-030320	Dipodomys ordii	69.47	0.00e+00	811.00
IUUC-Dme-031949	Drosophila melanogaster	27.86	3.00e-47	183.00
IUUC-Ete-032691	Echinops telfairi	56.96	6.00e-134	471.00
IUUC-Eca-034320	Equus caballus	76.09	0.00e+00	1125.00
IUUC-Fca-035732	Felis catus	77.01	0.00e+00	1057.00
IUUC-Fal-036648	Ficedula albicollis	70.37	0.00e+00	729.00
IUUC-Gmo-038609	Gadus morhua	59.67	3.00e-143	501.00
IUUC-Gga-040522	Gallus gallus	69.74	2.00e-109	389.00
IUUC-Gac-042318	Gasterosteus aculeatus	55.42	9.00e-135	473.00
IUUC-Gma-043184	Glycine max	26.32	4.00e-26	113.00
IUUC-Ggo-044464	Gorilla gorilla	74.26	0.00e+00	1093.00
IUUC-Hsa-045991	Homo sapiens	74.01	0.00e+00	1090.00
IUUC-Hvu-047705	Hordeum vulgare	26.07	5.00e-32	132.00
IUUC-Itr-047977	Ictidomys tridecemlineatus	74.10	0.00e+00	1132.00
IUUC-Lch-050112	Latimeria chalumnae	65.70	0.00e+00	672.00
IUUC-Lpe-051605	Leersia perrieri	27.19	6.00e-19	89.40
IUUC-Loc-052241	Lepisosteus oculatus	63.14	0.00e+00	645.00
IUUC-Laf-054559	Loxodonta africana	74.22	0.00e+00	954.00
IUUC-Mcc-055093	Macaca mulatta	73.75	0.00e+00	1090.00
IUUC-Meu-056417	Macropus eugenii	66.21	0.00e+00	687.00
IUUC-Mtr-058533	Medicago truncatula	27.76	4.00e-32	132.00
IUUC-Mga-059498	Meleagris gallopavo	69.15	0.00e+00	695.00
IUUC-Mmr-061782	Microcebus murinus	78.70	0.00e+00	1138.00
IUUC-Mdo-062053	Monodelphis domestica	59.22	0.00e+00	779.00
IUUC-Mmu-063352	Mus musculus	68.44	0.00e+00	978.00
IUUC-Mac-064582	Musa acuminata	26.26	7.00e-22	99.00
IUUC-Mpu-066087	Mustela putorius furo	74.04	0.00e+00	1080.00
IUUC-Mlu-068147	Myotis lucifugus	73.41	0.00e+00	996.00
IUUC-Nle-069503	Nomascus leucogenys	71.19	0.00e+00	1030.00
IUUC-Opr-070479	Ochotona princeps	66.24	0.00e+00	932.00
IUUC-Ont-071700	Oreochromis niloticus	58.25	4.00e-170	591.00
IUUC-Oan-073702	Ornithorhynchus anatinus	74.70	0.00e+00	793.00
IUUC-Ocu-074886	Oryctolagus cuniculus	70.88	0.00e+00	1045.00
IUUC-Oba-075729	Oryza barthii	27.19	8.00e-27	115.00
IUUC-Obr-076562	Oryza brachyantha	27.09	2.00e-22	100.00
IUUC-Ogl-077615	Oryza glaberrima	27.19	8.00e-27	115.00
IUUC-Ogu-078921	Oryza glumaepatula	27.19	2.00e-27	117.00
IUUC-Oin-079250	Oryza indica	25.15	2.00e-19	90.10
IUUC-Olo-080758	Oryza longistaminata	26.11	5.00e-26	112.00
IUUC-Ome-081707	Oryza meridionalis	25.35	2.00e-20	94.00
IUUC-Oni-083006	Oryza nivara	27.19	3.00e-27	116.00
IUUC-Opu-083650	Oryza punctata	27.18	6.00e-27	115.00
IUUC-Oru-084924	Oryza rufipogon	27.07	7.00e-28	118.00
IUUC-Osa-085820	Oryza sativa	27.19	3.00e-27	116.00
IUUC-Ola-087229	Oryzias latipes	58.10	2.00e-138	485.00
IUUC-Oar-089461	Ovis aries	73.09	0.00e+00	1066.00
IUUC-Ptr-090527	Pan troglodytes	74.26	0.00e+00	1087.00
IUUC-Pan-092431	Papio anubis	73.30	0.00e+00	1005.00
IUUC-Psi-093156	Pelodiscus sinensis	70.87	0.00e+00	770.00
IUUC-Ppa-095305	Physcomitrella patens	35.43	3.00e-19	90.90
IUUC-Pfo-097065	Poecilia formosa	58.08	6.00e-165	574.00
IUUC-Pab-098272	Pongo abelii	74.52	0.00e+00	1093.00
IUUC-Pop-099827	Populus trichocarpa	29.51	4.00e-31	129.00
IUUC-Pca-100713	Procavia capensis	64.52	0.00e+00	910.00
IUUC-Ppe-102103	Prunus persica	25.32	6.00e-33	135.00
IUUC-Pva-103133	Pteropus vampyrus	85.47	0.00e+00	758.00
IUUC-Sha-107628	Sarcophilus harrisii	59.78	0.00e+00	800.00
IUUC-Sit-109781	Setaria italica	26.28	4.00e-25	109.00
IUUC-Sly-111779	Solanum lycopersicum	29.00	3.00e-31	130.00
IUUC-Stu-112817	Solanum tuberosum	46.60	2.00e-19	89.70
IUUC-Sar-113124	Sorex araneus	66.38	0.00e+00	699.00
IUUC-Sbi-114107	Sorghum bicolor	26.15	1.00e-30	127.00
IUUC-Ssc-115850	Sus scrofa	73.34	0.00e+00	1049.00
IUUC-Tgu-117295	Taeniopygia guttata	71.79	0.00e+00	743.00
IUUC-Tru-117539	Takifugu rubripes	57.48	1.00e-169	589.00
IUUC-Tsy-118805	Tarsius syrichta	68.14	2.00e-108	386.00
IUUC-Tni-120274	Tetraodon nigroviridis	58.47	3.00e-168	584.00
IUUC-Tca-121162	Theobroma cacao	32.92	2.00e-30	127.00
IUUC-Tae-124822	Triticum aestivum	26.41	2.00e-32	134.00
IUUC-Tur-126162	Triticum urartu	24.46	9.00e-21	95.50
IUUC-Tbe-127884	Tupaia belangeri	65.65	4.00e-73	269.00
IUUC-Ttr-128665	Tursiops truncatus	87.65	2.00e-137	483.00
IUUC-Vpa-130385	Vicugna pacos	75.84	0.00e+00	1081.00
IUUC-Vvi-131464	Vitis vinifera	25.99	3.00e-26	113.00
IUUC-Xtr-132015	Xenopus tropicalis	70.36	0.00e+00	719.00
IUUC-Xma-133109	Xiphophorus maculatus	58.52	4.00e-165	575.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence