iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114178

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000765

Gene Name

SORBI_006G157500

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb06g023430	Sb06g023430.1	Sb06g023430.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	7.00e-06	26.8	41	106
E3 activity/RING/RING	2.40e-09	38.4	44	95

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 5    eflCpIslelMrdPvvlpsGitydrssIekwlasggk............tcPvtrqplteedlvPn 58
            f C I l+   +Pvv+ +G+ y   +I +wl+ g +            +cPv++++l+ ++lvP 
   Q: 41   CFDCNICLDFAAEPVVTLCGHLYCWPCIYEWLRPGVEstasdnsssarrQCPVCKATLSTDTLVPL 106
           599*****************************55555555666688889***************96 PP

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkw.......pglknssskefrCPlCr 46
           C iCl+   + p+v+ CgH+++  C++ w         + nsss + +CP+C+
   Q: 44   CNICLDFAAE-PVVTLCGHLYCWPCIYEWlrpgvesTASDNSSSARRQCPVCK 95
           99****8888.999**********************999999**********7 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MEAGRVDQPC MAATNSQPFV ADIEPVKKAS GDMPVTTGSG CFDCNICLDF AAEPVVTLCG 60
HLYCWPCIYE WLRPGVESTA SDNSSSARRQ CPVCKATLST DTLVPLYGRG GDSKKSPNSI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAATCCGCCT CCTCTGCTCA TCTCTCCCTC CTGCCATATT ATCGCCGGCT GCCGTGCCGC 60
AGCGTCCTGC TCCTCCCTCC CCGTCGCCCG AAGCACCGCC GCGGCCTCGC GCCACCGCCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00097--zf-C3HC4

SMART

SM00184--RING

Gene Ontology

GO:0036513--C:Derlin-1 retrotranslocation complex
GO:0016021--C:integral component of membrane
GO:1904264--F:ubiquitin protein ligase activity involved in ERAD pathway
GO:0044390--F:ubiquitin-like protein conjugating enzyme binding
GO:0008270--F:zinc ion binding
GO:0071712--P:ER-associated misfolded protein catabolic process
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG

sbi:SORBI_06g023430

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000767	Aegilops tauschii	67.21	2.00e-89	321.00
IUUC-Aly-006069	Arabidopsis lyrata	34.63	9.00e-27	112.00
IUUC-Ath-006807	Arabidopsis thaliana	35.12	1.00e-28	119.00
IUUC-Afl-008526	Aspergillus flavus	36.11	7.00e-09	52.80
IUUC-Ame-011316	Astyanax mexicanus	37.50	5.00e-23	99.80
IUUC-Bdi-014949	Brachypodium distachyon	71.54	8.00e-94	335.00
IUUC-Bol-015969	Brassica oleracea	55.56	2.00e-25	107.00
IUUC-Bra-017909	Brassica rapa	33.64	4.00e-28	117.00
IUUC-Gma-044004	Glycine max	35.78	6.00e-32	130.00
IUUC-Hvu-047276	Hordeum vulgare	68.80	2.00e-93	334.00
IUUC-Lpe-051528	Leersia perrieri	69.42	4.00e-90	324.00
IUUC-Mtr-058147	Medicago truncatula	36.87	6.00e-31	126.00
IUUC-Mac-065357	Musa acuminata	47.58	8.00e-50	189.00
IUUC-Oba-075301	Oryza barthii	52.67	3.00e-30	124.00
IUUC-Obr-076866	Oryza brachyantha	71.49	9.00e-88	315.00
IUUC-Ogl-077734	Oryza glaberrima	69.71	6.00e-89	319.00
IUUC-Ogu-078280	Oryza glumaepatula	69.71	2.00e-89	321.00
IUUC-Oin-079906	Oryza indica	69.71	2.00e-89	321.00
IUUC-Olo-081070	Oryza longistaminata	69.29	3.00e-89	320.00
IUUC-Ome-081915	Oryza meridionalis	69.29	6.00e-89	319.00
IUUC-Oni-082950	Oryza nivara	69.71	2.00e-89	321.00
IUUC-Opu-083549	Oryza punctata	70.66	1.00e-91	328.00
IUUC-Oru-085110	Oryza rufipogon	53.64	3.00e-30	124.00
IUUC-Osa-085904	Oryza sativa	69.71	2.00e-89	321.00
IUUC-Pop-099944	Populus trichocarpa	37.89	9.00e-35	139.00
IUUC-Ppe-101989	Prunus persica	40.74	2.00e-30	125.00
IUUC-Sit-110543	Setaria italica	83.74	3.00e-123	433.00
IUUC-Sly-111102	Solanum lycopersicum	38.03	2.00e-28	117.00
IUUC-Stu-112310	Solanum tuberosum	40.19	2.00e-31	128.00
IUUC-Tca-121702	Theobroma cacao	38.32	2.00e-31	128.00
IUUC-Tae-124302	Triticum aestivum	67.87	3.00e-93	333.00
IUUC-Tur-126644	Triticum urartu	67.26	4.00e-83	301.00
IUUC-Vvi-131259	Vitis vinifera	39.34	1.00e-29	122.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence