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Tag Content
iUUCD ID IUUC-Xtr-131800
Ensembl Protein ID ENSXETP00000029819.3
UniProt Accession F6VP39; F6VP39_XENTR
Genbank Protein ID ENSXETP00000029819
Protein Name UPF1 regulator of nonsense transcripts homolog
Genbank Nucleotide ID AAMC01084992
Gene Name upf1
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSXETG00000013602.3 ENSXETT00000029819.3 ENSXETP00000029819.3
ENSXETG00000013602.3 ENSXETT00000061144.1 ENSXETP00000063699.1
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
E3 activity/Other 55.61 0.00e+00 750.00 IUUC-Sce-106206
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Xenopus tropicalis
Protein Sequence
(Fasta)
MSVEAYGPSS QTLTFLDTEE AELLGADTQG SEFEFTDFTL PSQTQTQGQS QNQLDGQGWK 60
APRVPELGSC AGQSTSRIVN GPDGMLQNGT VDDGVGKTSQ LLGELNFEED EEDTYYTKDL 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Xtr-131800|E3,E3 activity/Other|Xenopus tropicalis
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGAGCGTGG AGGCGTACGG GCCCAGCTCG CAGACCCTCA CTTTCTTGGA TACGGAGGAG 60
GCCGAGCTGC TCGGGGCCGA CACTCAGGGC TCAGAGTTTG AGTTCACAGA CTTCACGCTG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Xtr-131800|E3,E3 activity/Other|Xenopus tropicalis
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
Interpro

IPR006935--Helicase/UvrB_N
IPR027417--P-loop_NTPase
IPR018999--RNA-helicase_UPF1_UPF2-interct
Pfam

PF04851--ResIII
PF09416--UPF1_Zn_bind
Gene Ontology

GO:0005737--C:cytoplasm
GO:0005524--F:ATP binding
GO:0003677--F:DNA binding
GO:0004386--F:helicase activity
GO:0008270--F:zinc ion binding
GO:0043009--P:chordate embryonic development
GO:0000184--P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000680 Aegilops tauschii 63.80 0.00e+00 913.00
IUUC-Aml-002008 Ailuropoda melanoleuca 81.43 0.00e+00 1727.00
IUUC-Atr-002632 Amborella trichopoda 59.95 0.00e+00 1008.00
IUUC-Apl-003997 Anas platyrhynchos 84.30 0.00e+00 1668.00
IUUC-Aca-004322 Anolis carolinensis 31.84 6.00e-28 119.00
IUUC-Aly-006521 Arabidopsis lyrata 64.70 0.00e+00 992.00
IUUC-Ath-007059 Arabidopsis thaliana 64.44 0.00e+00 992.00
IUUC-Ago-007801 Ashbya gossypii 53.67 0.00e+00 739.00
IUUC-Acl-008312 Aspergillus clavatus 62.80 0.00e+00 952.00
IUUC-Afl-008429 Aspergillus flavus 61.78 0.00e+00 953.00
IUUC-Afu-009092 Aspergillus fumigatus 62.04 0.00e+00 951.00
IUUC-Ani-009317 Aspergillus nidulans 62.53 0.00e+00 951.00
IUUC-Ang-009783 Aspergillus niger 51.41 0.00e+00 947.00
IUUC-Aor-010178 Aspergillus oryzae 61.78 0.00e+00 953.00
IUUC-Ate-010294 Aspergillus terreus 51.75 0.00e+00 956.00
IUUC-Ame-010774 Astyanax mexicanus 61.88 9.00e-137 481.00
IUUC-Bgr-012293 Blumeria graminis 65.87 0.00e+00 941.00
IUUC-Bta-012382 Bos taurus 82.20 0.00e+00 1728.00
IUUC-Bci-013937 Botrytis cinerea 66.02 0.00e+00 941.00
IUUC-Bdi-014612 Brachypodium distachyon 65.77 0.00e+00 997.00
IUUC-Bol-015145 Brassica oleracea 63.78 0.00e+00 981.00
IUUC-Bra-017370 Brassica rapa 63.78 0.00e+00 983.00
IUUC-Cel-018240 Caenorhabditis elegans 52.03 0.00e+00 787.00
IUUC-Cja-019892 Callithrix jacchus 83.41 0.00e+00 1645.00
IUUC-Cfa-020700 Canis familiaris 82.64 0.00e+00 1731.00
IUUC-Cpo-021510 Cavia porcellus 82.03 0.00e+00 1746.00
IUUC-Cre-022731 Chlamydomonas reinhardtii 57.85 0.00e+00 770.00
IUUC-Csa-023665 Chlorocebus sabaeus 82.20 0.00e+00 1716.00
IUUC-Cin-025798 Ciona intestinalis 81.64 0.00e+00 1145.00
IUUC-Csv-025901 Ciona savignyi 63.03 0.00e+00 1353.00
IUUC-Cgl-026653 Colletotrichum gloeosporioides 62.70 0.00e+00 918.00
IUUC-Cne-027014 Cryptococcus neoformans 62.67 0.00e+00 946.00
IUUC-Dre-028705 Danio rerio 80.19 0.00e+00 1700.00
IUUC-Dor-030369 Dipodomys ordii 82.84 0.00e+00 1644.00
IUUC-Dme-031767 Drosophila melanogaster 59.01 0.00e+00 1075.00
IUUC-Ete-032800 Echinops telfairi 33.33 6.00e-28 119.00
IUUC-Eca-033840 Equus caballus 83.44 0.00e+00 1647.00
IUUC-Fca-035466 Felis catus 83.65 0.00e+00 1657.00
IUUC-Fal-037548 Ficedula albicollis 82.09 0.00e+00 1621.00
IUUC-Fox-038023 Fusarium oxysporum 62.50 0.00e+00 917.00
IUUC-Gmo-039285 Gadus morhua 78.35 0.00e+00 1647.00
IUUC-Ggr-039810 Gaeumannomyces graminis 65.05 0.00e+00 939.00
IUUC-Gga-040972 Gallus gallus 82.56 0.00e+00 1718.00
IUUC-Gac-042075 Gasterosteus aculeatus 79.60 0.00e+00 1689.00
IUUC-Gma-042713 Glycine max 65.48 0.00e+00 1031.00
IUUC-Ggo-045398 Gorilla gorilla 83.41 0.00e+00 1647.00
IUUC-Hsa-046152 Homo sapiens 82.20 0.00e+00 1716.00
IUUC-Hvu-047555 Hordeum vulgare 71.05 0.00e+00 717.00
IUUC-Itr-048247 Ictidomys tridecemlineatus 83.45 0.00e+00 1626.00
IUUC-Kpa-049205 Komagataella pastoris 48.01 5.00e-171 594.00
IUUC-Lch-049587 Latimeria chalumnae 77.25 0.00e+00 971.00
IUUC-Lpe-051059 Leersia perrieri 71.82 0.00e+00 1004.00
IUUC-Loc-051911 Lepisosteus oculatus 81.85 0.00e+00 1690.00
IUUC-Lma-053007 Leptosphaeria maculans 64.77 0.00e+00 920.00
IUUC-Laf-054234 Loxodonta africana 81.67 0.00e+00 1709.00
IUUC-Mcc-054762 Macaca mulatta 82.20 0.00e+00 1724.00
IUUC-Meu-056677 Macropus eugenii 66.41 2.00e-153 536.00
IUUC-Mor-057147 Magnaporthe oryzae 64.80 0.00e+00 933.00
IUUC-Mpo-057314 Magnaporthe poae 65.05 0.00e+00 940.00
IUUC-Mtr-058329 Medicago truncatula 65.48 0.00e+00 1030.00
IUUC-Mla-059094 Melampsora laricipopulina 66.00 0.00e+00 671.00
IUUC-Mga-060126 Meleagris gallopavo 83.62 0.00e+00 1638.00
IUUC-Mvi-060373 Microbotryum violaceum 70.27 0.00e+00 1008.00
IUUC-Mmr-060628 Microcebus murinus 82.03 0.00e+00 1722.00
IUUC-Mdo-061858 Monodelphis domestica 82.73 0.00e+00 1660.00
IUUC-Mmu-064116 Mus musculus 81.67 0.00e+00 1702.00
IUUC-Mac-065136 Musa acuminata 70.47 0.00e+00 996.00
IUUC-Mpu-066463 Mustela putorius furo 82.47 0.00e+00 1719.00
IUUC-Mlu-068098 Myotis lucifugus 82.23 0.00e+00 1706.00
IUUC-Nfi-068370 Neosartorya fischeri 62.04 0.00e+00 951.00
IUUC-Ncr-068792 Neurospora crassa 65.57 0.00e+00 929.00
IUUC-Nle-070102 Nomascus leucogenys 83.32 0.00e+00 1638.00
IUUC-Opr-070620 Ochotona princeps 75.92 0.00e+00 1472.00
IUUC-Ont-072685 Oreochromis niloticus 78.85 0.00e+00 1669.00
IUUC-Oan-073665 Ornithorhynchus anatinus 81.97 0.00e+00 1713.00
IUUC-Ocu-074154 Oryctolagus cuniculus 32.57 4.00e-31 130.00
IUUC-Oba-075075 Oryza barthii 60.31 0.00e+00 751.00
IUUC-Obr-076183 Oryza brachyantha 64.72 0.00e+00 827.00
IUUC-Ogl-077691 Oryza glaberrima 72.74 0.00e+00 1001.00
IUUC-Ogu-078423 Oryza glumaepatula 72.74 0.00e+00 1001.00
IUUC-Oin-080107 Oryza indica 72.74 0.00e+00 1001.00
IUUC-Olo-080269 Oryza longistaminata 72.32 0.00e+00 930.00
IUUC-Ome-081779 Oryza meridionalis 72.74 0.00e+00 1000.00
IUUC-Oni-082366 Oryza nivara 72.74 0.00e+00 1001.00
IUUC-Opu-083958 Oryza punctata 72.46 0.00e+00 1004.00
IUUC-Oru-084182 Oryza rufipogon 72.74 0.00e+00 1001.00
IUUC-Osa-085285 Oryza sativa 72.46 0.00e+00 1001.00
IUUC-Ola-086954 Oryzias latipes 77.98 0.00e+00 1655.00
IUUC-Olu-087685 Ostreococcus lucimarinus 56.71 0.00e+00 751.00
IUUC-Oga-088591 Otolemur garnettii 82.29 0.00e+00 1719.00
IUUC-Oar-089417 Ovis aries 81.58 0.00e+00 1598.00
IUUC-Ptr-091510 Pan troglodytes 80.12 0.00e+00 1473.00
IUUC-Pan-091886 Papio anubis 82.20 0.00e+00 1716.00
IUUC-Psi-093755 Pelodiscus sinensis 78.35 0.00e+00 1093.00
IUUC-Pma-094470 Petromyzon marinus 74.49 0.00e+00 1555.00
IUUC-Pno-094963 Phaeosphaeria nodorum 65.07 0.00e+00 924.00
IUUC-Ppa-095479 Physcomitrella patens 65.97 0.00e+00 1042.00
IUUC-Pfo-097456 Poecilia formosa 78.94 0.00e+00 1673.00
IUUC-Pab-098075 Pongo abelii 78.74 0.00e+00 1594.00
IUUC-Pop-099557 Populus trichocarpa 64.83 0.00e+00 1021.00
IUUC-Pca-100717 Procavia capensis 95.22 4.00e-157 548.00
IUUC-Ppe-101675 Prunus persica 65.48 0.00e+00 1031.00
IUUC-Pva-103029 Pteropus vampyrus 93.79 0.00e+00 1341.00
IUUC-Pgr-103318 Puccinia graminis 66.81 0.00e+00 963.00
IUUC-Ptt-103956 Puccinia triticina 66.38 0.00e+00 957.00
IUUC-Pte-104399 Pyrenophora teres 65.22 0.00e+00 928.00
IUUC-Pyt-104749 Pyrenophora triticirepentis 65.07 0.00e+00 927.00
IUUC-Rno-105784 Rattus norvegicus 81.67 0.00e+00 1734.00
IUUC-Sce-106206 Saccharomyces cerevisiae 55.61 0.00e+00 719.00
IUUC-Sha-106566 Sarcophilus harrisii 83.92 0.00e+00 1664.00
IUUC-Sja-107721 Schizosaccharomyces japonicus 60.76 0.00e+00 879.00
IUUC-Spo-108258 Schizosaccharomyces pombe 57.24 0.00e+00 837.00
IUUC-Ssl-108640 Sclerotinia sclerotiorum 61.98 0.00e+00 865.00
IUUC-Sit-109760 Setaria italica 65.99 0.00e+00 998.00
IUUC-Sly-111807 Solanum lycopersicum 66.18 0.00e+00 1036.00
IUUC-Stu-112869 Solanum tuberosum 71.72 0.00e+00 1025.00
IUUC-Sar-112950 Sorex araneus 38.51 6.00e-24 105.00
IUUC-Sbi-114863 Sorghum bicolor 66.26 0.00e+00 999.00
IUUC-Sre-115092 Sporisorium reilianum 65.97 0.00e+00 1003.00
IUUC-Tgu-117214 Taeniopygia guttata 80.37 0.00e+00 1315.00
IUUC-Tru-118386 Takifugu rubripes 75.89 0.00e+00 1664.00
IUUC-Tsy-119550 Tarsius syrichta 95.27 1.00e-162 566.00
IUUC-Tni-120212 Tetraodon nigroviridis 77.66 0.00e+00 1581.00
IUUC-Tca-121353 Theobroma cacao 66.67 0.00e+00 1024.00
IUUC-Tre-122245 Trichoderma reesei 34.06 5.00e-30 127.00
IUUC-Tvi-122452 Trichoderma virens 62.99 0.00e+00 882.00
IUUC-Tae-123692 Triticum aestivum 71.99 0.00e+00 996.00
IUUC-Tur-126770 Triticum urartu 59.69 0.00e+00 826.00
IUUC-Tme-126956 Tuber melanosporum 66.28 0.00e+00 959.00
IUUC-Tbe-127873 Tupaia belangeri 34.48 6.00e-26 112.00
IUUC-Ttr-128212 Tursiops truncatus 78.24 0.00e+00 1594.00
IUUC-Uma-129327 Ustilago maydis 68.60 0.00e+00 1003.00
IUUC-Vda-129858 Verticillium dahliae 64.22 0.00e+00 917.00
IUUC-Vpa-130743 Vicugna pacos 32.29 2.00e-26 114.00
IUUC-Vvi-131222 Vitis vinifera 65.61 0.00e+00 1008.00
IUUC-Xma-133216 Xiphophorus maculatus 78.85 0.00e+00 1669.00
IUUC-Yli-134482 Yarrowia lipolytica 51.98 0.00e+00 686.00
IUUC-Zma-134802 Zea mays 65.53 0.00e+00 1006.00
Created Date 25-Jun-2017

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