iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndex	Mentha
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	2.10e-06	29.0	191	233

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf...kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           C++Cl+df   ++ +++lp C H+fh+ C+ +w        ++ +CP Cr
   Q: 191  CSVCLQDFqlgET-VRSLPhCHHMFHLPCIDNW------LFRHGSCPMCR 233
           ********88555.*******************......99********8 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Intrinsic thylakoid membrane protein that fixes RPOT2 on the stromal side of the thylakoid membrane.

Protein Sequence
(Fasta)

MASSRFQSGF CPISSCPSLE NFIERIKDAC RFTLSAVLGT ILSAVLTFFF ALVGTLLGAL 60
TGALIGQETE SGFIRGAAVG AISGAVFSIE VFESSLVLWK SNESRFGCLL YLIDVIVSLI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAAATTTAT GTAAAAAACG AAGAAGTTAT TTTATTAAAC TATAAATAAC CTTTTCTTTA 60
TAACTCTCTG CTTCTATCTT TCGAGCATTG AAATGATTAA AAAAAAATTA GTGGTGTTTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0150--Chloroplast
KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-0934--Plastid
KW-1185--Reference proteome
KW-0793--Thylakoid
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR027367--Gly-zipper_YMGG
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13441--Gly-zipper_YMGG
PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0009535--C:chloroplast thylakoid membrane
GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT4G35840

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000505	Aegilops tauschii	54.17	4.00e-59	220.00
IUUC-Atr-002941	Amborella trichopoda	46.78	9.00e-43	165.00
IUUC-Aly-006511	Arabidopsis lyrata	98.31	2.00e-122	431.00
IUUC-Bdi-014773	Brachypodium distachyon	55.88	4.00e-53	200.00
IUUC-Bol-015818	Brassica oleracea	92.77	2.00e-128	450.00
IUUC-Bra-017036	Brassica rapa	92.34	2.00e-127	447.00
IUUC-Cin-025662	Ciona intestinalis	31.97	8.00e-11	60.80
IUUC-Cne-026951	Cryptococcus neoformans	45.28	1.00e-09	57.00
IUUC-Gma-043841	Glycine max	79.22	7.00e-96	342.00
IUUC-Hvu-047681	Hordeum vulgare	50.98	1.00e-50	192.00
IUUC-Lpe-051237	Leersia perrieri	51.78	3.00e-59	220.00
IUUC-Mtr-058160	Medicago truncatula	78.54	4.00e-89	319.00
IUUC-Mac-064778	Musa acuminata	61.00	6.00e-71	259.00
IUUC-Oba-075390	Oryza barthii	51.78	5.00e-59	219.00
IUUC-Obr-076264	Oryza brachyantha	51.78	4.00e-59	220.00
IUUC-Ogl-077598	Oryza glaberrima	51.78	5.00e-59	219.00
IUUC-Ogu-078526	Oryza glumaepatula	51.78	5.00e-59	219.00
IUUC-Oin-079706	Oryza indica	51.78	5.00e-59	219.00
IUUC-Olo-080832	Oryza longistaminata	51.78	5.00e-59	219.00
IUUC-Ome-081142	Oryza meridionalis	51.78	5.00e-59	219.00
IUUC-Oni-082117	Oryza nivara	51.78	5.00e-59	219.00
IUUC-Opu-083964	Oryza punctata	51.78	4.00e-59	219.00
IUUC-Oru-084552	Oryza rufipogon	51.78	5.00e-59	219.00
IUUC-Osa-085950	Oryza sativa	51.78	5.00e-59	219.00
IUUC-Pop-099844	Populus trichocarpa	77.68	7.00e-104	369.00
IUUC-Ppe-101906	Prunus persica	82.16	3.00e-103	367.00
IUUC-Pte-104409	Pyrenophora teres	44.78	4.00e-11	62.40
IUUC-Sce-106223	Saccharomyces cerevisiae	36.67	7.00e-11	59.30
IUUC-Sit-110188	Setaria italica	57.36	1.00e-55	209.00
IUUC-Sbi-114329	Sorghum bicolor	50.89	1.00e-50	192.00
IUUC-Tca-121142	Theobroma cacao	80.56	1.00e-103	368.00
IUUC-Tae-122750	Triticum aestivum	55.36	2.00e-49	187.00
IUUC-Tur-126137	Triticum urartu	42.40	9.00e-39	152.00
IUUC-Vvi-131089	Vitis vinifera	78.08	1.00e-100	358.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence