iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
HINT
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	3.10e-09	38.1	292	333

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C+iCl++++dg  +++lpC+H+fh +C+ kw       + +++CPlC+
   Q: 292  CCICLSSYEDGaeLVSLPCNHHFHSTCIVKW------LKMNATCPLCK 333
           ********88766999***************......**********7 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MSSPESPSGS DSSTPLLRSR QSSPRRQPVI AVLLNRASGR RGASMVVRET AAQELEERRA 60
DWGYSKPVVA LDMLWNTAFV LVAIVMLLVF KEEKPNVPIR IWICGYAIQC LVHVVLVWLE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCTCTTAAAC ATAACCGAGA AGACAAGTGT TAAAAATCTC AATTTCCTAA CCACCAGTCT 60
AATTGTTGAC TACTAAAACG TCTGTAATCC TCTAATCTCT AACTCTTAAC ACATATTGTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0005774--C:vacuolar membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT1G68070

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006309	Arabidopsis lyrata	93.35	2.00e-162	563.00
IUUC-Bdi-014419	Brachypodium distachyon	58.58	7.00e-69	253.00
IUUC-Bol-015503	Brassica oleracea	80.44	8.00e-125	439.00
IUUC-Bra-017341	Brassica rapa	82.34	5.00e-129	453.00
IUUC-Gma-042852	Glycine max	65.34	7.00e-100	356.00
IUUC-Kpa-049210	Komagataella pastoris	40.00	6.00e-08	49.70
IUUC-Lpe-050934	Leersia perrieri	54.34	2.00e-89	321.00
IUUC-Mtr-058387	Medicago truncatula	67.06	2.00e-98	351.00
IUUC-Mac-064512	Musa acuminata	56.74	7.00e-93	333.00
IUUC-Oba-075784	Oryza barthii	57.53	7.00e-74	269.00
IUUC-Obr-076831	Oryza brachyantha	57.53	1.00e-73	268.00
IUUC-Ogu-077960	Oryza glumaepatula	51.82	2.00e-83	302.00
IUUC-Oin-079107	Oryza indica	51.41	1.00e-79	289.00
IUUC-Olo-080835	Oryza longistaminata	49.44	2.00e-64	239.00
IUUC-Ome-081564	Oryza meridionalis	57.19	7.00e-91	326.00
IUUC-Oni-082731	Oryza nivara	52.12	4.00e-84	303.00
IUUC-Opu-083749	Oryza punctata	57.33	5.00e-86	310.00
IUUC-Oru-084835	Oryza rufipogon	52.12	4.00e-84	303.00
IUUC-Pop-098913	Populus trichocarpa	67.72	7.00e-110	389.00
IUUC-Ppe-101978	Prunus persica	62.60	5.00e-109	387.00
IUUC-Sit-110199	Setaria italica	58.17	3.00e-85	308.00
IUUC-Sly-110887	Solanum lycopersicum	61.93	4.00e-112	397.00
IUUC-Stu-112563	Solanum tuberosum	62.99	3.00e-116	410.00
IUUC-Sbi-114428	Sorghum bicolor	57.84	2.00e-84	305.00
IUUC-Tca-121328	Theobroma cacao	69.49	2.00e-104	372.00
IUUC-Tae-125157	Triticum aestivum	57.00	4.00e-72	264.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence