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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Ath-007045
Ensembl Protein ID AT2G39990.1
UniProt Accession O04202; Q8W4H4; EIF3F_ARATH
Genbank Protein ID AAD03463.1; AAB95284.1; AEC09760.1; AAK76498.1; AAL32634.1; AAM14302.1; AAM13367.1
Protein Name Eukaryotic translation initiation factor 3 subunit F; eIF-3-epsilon; eIF3 p32 subunit
Genbank Nucleotide ID U54561; AF002109; CP002685; AY045824; AY062556; AY091363; AY093368
Gene Name TIF3F1; At2g39990; T29M21.15
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT2G39990 AT2G39990.1 AT2G39990.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
PINA
Post-translational Modifications (PTMs)
UniProt
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
DUB/JAMM 39.16 1.00e-48 191.00 IUUC-Hsa-046860
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation (Potential). Involved in cell growth and differentiation, especially during embryogenesis and male gametophyte germination (PubMed:20444226). Regulates sensitivity to sugars (e.g. sucrose) (PubMed:20444226).
 Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation (Potential). Involved in cell growth and differentiation, especially during embryogenesis and male gametophyte germination (PubMed:20444226). Regulates sensitivity to sugars (e.g. sucrose) (PubMed:20444226).
Protein Sequence
(Fasta)
MAATSEHTIL QFVSPSSTAS ATTSVLTARI HPLVIFNVCD CFVRRPDSAE RVIGTLLGSI 60
LPDGTVDIRN SYAVPHNESS DQVAVDIDYH HNMLASHLKV NSKETIVGWY STGAGVNGGS 120
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Protein Fasta Sequence


>IUUC-Ath-007045|DUB,JAMM|Arabidopsis thaliana
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Nucleotide Sequence
(Fasta)
TGTAGATGTT AAATTATGAG AAAAACACAA TTTCACTTTC ACAGTGTATA ATATTCAAAA 60
TTCAATGATA AACACACACA CAAAAACGTT ATAAAAAACC CAAACCGACG ATGAGTAACC 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-007045|DUB,JAMM|Arabidopsis thaliana
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Sequence Source Ensembl
Keyword

KW-0007--Acetylation
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome
Interpro

IPR027531--eIF3f
IPR000555--JAMM/MPN+_dom
IPR024969--Rpn11/EIF3F_C
Pfam

PF01398--JAB
PF13012--MitMem_reg
SMART

SM00232--JAB_MPN
Gene Ontology

GO:0005737--C:cytoplasm
GO:0005829--C:cytosol
GO:0071541--C:eukaryotic translation initiation factor 3 complex, eIF3m
GO:0016020--C:membrane
GO:0005634--C:nucleus
GO:0003743--F:translation initiation factor activity
GO:0031369--F:translation initiation factor binding
GO:0009793--P:embryo development ending in seed dormancy
GO:0009846--P:pollen germination
GO:0009744--P:response to sucrose
GO:0006413--P:translational initiation
KEGG ath:AT2G39990
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001150 Aegilops tauschii 63.70 1.00e-94 339.00
IUUC-Aml-001527 Ailuropoda melanoleuca 39.16 2.00e-52 198.00
IUUC-Atr-002686 Amborella trichopoda 70.93 2.00e-107 381.00
IUUC-Apl-003977 Anas platyrhynchos 37.73 4.00e-40 157.00
IUUC-Aca-004335 Anolis carolinensis 39.54 2.00e-53 201.00
IUUC-Aly-005945 Arabidopsis lyrata 94.54 8.00e-144 501.00
IUUC-Acl-008365 Aspergillus clavatus 36.08 2.00e-40 159.00
IUUC-Afl-008742 Aspergillus flavus 36.08 2.00e-40 158.00
IUUC-Afu-009030 Aspergillus fumigatus 36.08 2.00e-41 161.00
IUUC-Ani-009212 Aspergillus nidulans 35.92 2.00e-40 159.00
IUUC-Ang-009712 Aspergillus niger 35.94 7.00e-40 157.00
IUUC-Aor-009885 Aspergillus oryzae 36.43 1.00e-41 163.00
IUUC-Ate-010315 Aspergillus terreus 35.74 3.00e-39 155.00
IUUC-Ame-010801 Astyanax mexicanus 48.15 7.00e-19 86.70
IUUC-Bgr-011982 Blumeria graminis 34.74 3.00e-38 151.00
IUUC-Bta-012804 Bos taurus 39.16 2.00e-52 198.00
IUUC-Bci-013891 Botrytis cinerea 33.22 9.00e-32 130.00
IUUC-Bdi-014328 Brachypodium distachyon 65.20 9.00e-94 335.00
IUUC-Bol-015446 Brassica oleracea 92.15 1.00e-148 518.00
IUUC-Bra-016862 Brassica rapa 91.81 3.00e-148 516.00
IUUC-Cel-018171 Caenorhabditis elegans 28.33 5.00e-24 104.00
IUUC-Cja-019335 Callithrix jacchus 39.16 3.00e-52 198.00
IUUC-Cfa-020138 Canis familiaris 38.78 7.00e-52 196.00
IUUC-Cpo-022109 Cavia porcellus 37.27 4.00e-42 164.00
IUUC-Cre-022664 Chlamydomonas reinhardtii 39.71 4.00e-54 204.00
IUUC-Csa-023994 Chlorocebus sabaeus 39.16 3.00e-52 197.00
IUUC-Cho-024351 Choloepus hoffmanni 34.98 3.00e-30 125.00
IUUC-Cin-025801 Ciona intestinalis 35.29 8.00e-47 179.00
IUUC-Csv-025805 Ciona savignyi 36.46 2.00e-46 178.00
IUUC-Cgl-026643 Colletotrichum gloeosporioides 32.25 2.00e-34 139.00
IUUC-Cne-026868 Cryptococcus neoformans 33.33 3.00e-25 107.00
IUUC-Cme-027328 Cyanidioschyzon merolae 26.52 2.00e-17 82.40
IUUC-Dre-028085 Danio rerio 39.92 2.00e-53 201.00
IUUC-Dno-030099 Dasypus novemcinctus 39.16 4.00e-52 197.00
IUUC-Dor-030324 Dipodomys ordii 35.36 1.00e-41 163.00
IUUC-Dse-031314 Dothistroma septosporum 35.42 2.00e-40 159.00
IUUC-Dme-031926 Drosophila melanogaster 38.89 3.00e-48 184.00
IUUC-Ete-032569 Echinops telfairi 37.64 3.00e-48 184.00
IUUC-Eca-033502 Equus caballus 36.88 2.00e-46 178.00
IUUC-Eeu-034883 Erinaceus europaeus 31.87 6.00e-21 93.20
IUUC-Fca-035873 Felis catus 39.16 3.00e-52 198.00
IUUC-Fal-036921 Ficedula albicollis 39.16 4.00e-52 197.00
IUUC-Fox-037765 Fusarium oxysporum 29.68 5.00e-27 114.00
IUUC-Fso-038240 Fusarium solani 30.60 1.00e-26 112.00
IUUC-Gmo-038864 Gadus morhua 38.02 2.00e-50 191.00
IUUC-Ggr-039862 Gaeumannomyces graminis 30.51 2.00e-26 112.00
IUUC-Gga-040952 Gallus gallus 39.16 6.00e-52 196.00
IUUC-Gac-041677 Gasterosteus aculeatus 39.25 4.00e-54 204.00
IUUC-Gma-043061 Glycine max 76.29 4.00e-115 406.00
IUUC-Ggo-045591 Gorilla gorilla 39.16 3.00e-52 198.00
IUUC-Hsa-046860 Homo sapiens 39.16 3.00e-52 197.00
IUUC-Hvu-047410 Hordeum vulgare 68.24 2.00e-52 197.00
IUUC-Itr-048211 Ictidomys tridecemlineatus 39.54 9.00e-53 199.00
IUUC-Lch-049410 Latimeria chalumnae 49.23 1.00e-33 135.00
IUUC-Lpe-051102 Leersia perrieri 72.48 8.00e-101 358.00
IUUC-Loc-052016 Lepisosteus oculatus 36.70 2.00e-42 165.00
IUUC-Lma-053157 Leptosphaeria maculans 34.04 8.00e-40 156.00
IUUC-Laf-054568 Loxodonta africana 39.16 6.00e-52 197.00
IUUC-Mcc-054613 Macaca mulatta 39.16 3.00e-52 198.00
IUUC-Mor-057104 Magnaporthe oryzae 30.41 1.00e-27 116.00
IUUC-Mtr-058445 Medicago truncatula 75.95 6.00e-125 439.00
IUUC-Mla-059038 Melampsora laricipopulina 33.47 3.00e-30 125.00
IUUC-Mga-059548 Meleagris gallopavo 37.89 2.00e-42 165.00
IUUC-Mvi-060520 Microbotryum violaceum 28.81 8.00e-17 80.50
IUUC-Mdo-062376 Monodelphis domestica 38.40 3.00e-51 194.00
IUUC-Mmu-063254 Mus musculus 39.16 2.00e-52 198.00
IUUC-Mac-065635 Musa acuminata 62.54 2.00e-99 354.00
IUUC-Mpu-066314 Mustela putorius furo 39.16 2.00e-52 198.00
IUUC-Mlu-067512 Myotis lucifugus 38.78 8.00e-53 200.00
IUUC-Nfi-068262 Neosartorya fischeri 36.08 2.00e-41 161.00
IUUC-Ncr-068872 Neurospora crassa 32.98 3.00e-29 121.00
IUUC-Nle-070118 Nomascus leucogenys 39.16 2.00e-52 198.00
IUUC-Opr-071228 Ochotona princeps 38.77 5.00e-44 170.00
IUUC-Ont-072600 Oreochromis niloticus 38.78 2.00e-53 201.00
IUUC-Oan-073584 Ornithorhynchus anatinus 37.89 3.00e-44 171.00
IUUC-Ocu-074542 Oryctolagus cuniculus 39.16 8.00e-53 200.00
IUUC-Oba-075923 Oryza barthii 69.07 6.00e-105 372.00
IUUC-Obr-076313 Oryza brachyantha 72.87 7.00e-100 355.00
IUUC-Ogl-076932 Oryza glaberrima 69.07 6.00e-105 372.00
IUUC-Ogu-078152 Oryza glumaepatula 69.07 6.00e-105 372.00
IUUC-Oin-079528 Oryza indica 69.07 6.00e-105 372.00
IUUC-Olo-080401 Oryza longistaminata 69.07 6.00e-105 372.00
IUUC-Ome-081553 Oryza meridionalis 68.73 1.00e-104 371.00
IUUC-Oni-082090 Oryza nivara 71.69 5.00e-105 372.00
IUUC-Opu-083583 Oryza punctata 73.64 6.00e-101 359.00
IUUC-Oru-084492 Oryza rufipogon 69.07 6.00e-105 372.00
IUUC-Osa-085383 Oryza sativa 69.07 6.00e-105 372.00
IUUC-Ola-086835 Oryzias latipes 39.16 3.00e-54 204.00
IUUC-Olu-087716 Ostreococcus lucimarinus 36.36 9.00e-37 146.00
IUUC-Oga-088886 Otolemur garnettii 38.78 4.00e-52 197.00
IUUC-Oar-090079 Ovis aries 39.16 2.00e-52 198.00
IUUC-Ptr-091457 Pan troglodytes 39.16 3.00e-52 197.00
IUUC-Pan-092317 Papio anubis 36.26 2.00e-28 118.00
IUUC-Psi-093129 Pelodiscus sinensis 36.08 7.00e-44 170.00
IUUC-Pma-094488 Petromyzon marinus 39.92 2.00e-54 204.00
IUUC-Pno-095049 Phaeosphaeria nodorum 34.04 5.00e-41 160.00
IUUC-Ppa-095341 Physcomitrella patens 61.19 8.00e-94 335.00
IUUC-Pfo-096286 Poecilia formosa 37.63 9.00e-53 199.00
IUUC-Pab-097765 Pongo abelii 39.16 3.00e-52 197.00
IUUC-Pop-099131 Populus trichocarpa 77.47 1.00e-122 431.00
IUUC-Pca-100524 Procavia capensis 31.86 2.00e-29 121.00
IUUC-Ppe-101934 Prunus persica 76.63 2.00e-124 437.00
IUUC-Pva-102577 Pteropus vampyrus 39.16 1.00e-52 199.00
IUUC-Pgr-103521 Puccinia graminis 35.38 2.00e-33 135.00
IUUC-Pte-104304 Pyrenophora teres 34.74 6.00e-42 164.00
IUUC-Pyt-104563 Pyrenophora triticirepentis 34.74 8.00e-42 163.00
IUUC-Rno-105717 Rattus norvegicus 39.54 5.00e-53 200.00
IUUC-Sha-107190 Sarcophilus harrisii 37.84 3.00e-48 185.00
IUUC-Sja-107918 Schizosaccharomyces japonicus 32.97 4.00e-33 134.00
IUUC-Spo-108355 Schizosaccharomyces pombe 34.10 2.00e-36 145.00
IUUC-Smo-109374 Selaginella moellendorffii 61.48 3.00e-96 343.00
IUUC-Sit-110119 Setaria italica 71.32 7.00e-103 365.00
IUUC-Sly-111570 Solanum lycopersicum 73.20 5.00e-109 386.00
IUUC-Stu-112308 Solanum tuberosum 73.54 3.00e-116 410.00
IUUC-Sar-113515 Sorex araneus 41.05 4.00e-17 80.10
IUUC-Sbi-114605 Sorghum bicolor 71.70 3.00e-102 364.00
IUUC-Sre-114906 Sporisorium reilianum 32.51 4.00e-37 147.00
IUUC-Tgu-117087 Taeniopygia guttata 38.33 2.00e-42 164.00
IUUC-Tru-117700 Takifugu rubripes 39.43 1.00e-55 209.00
IUUC-Tni-120470 Tetraodon nigroviridis 38.78 2.00e-53 201.00
IUUC-Tca-121109 Theobroma cacao 78.35 2.00e-119 421.00
IUUC-Tre-122095 Trichoderma reesei 31.32 2.00e-26 112.00
IUUC-Tvi-122580 Trichoderma virens 31.32 7.00e-26 110.00
IUUC-Tae-125129 Triticum aestivum 69.92 2.00e-100 358.00
IUUC-Tur-126658 Triticum urartu 63.60 5.00e-91 326.00
IUUC-Tme-127043 Tuber melanosporum 36.62 2.00e-41 162.00
IUUC-Tbe-127927 Tupaia belangeri 39.16 3.00e-52 198.00
IUUC-Ttr-129231 Tursiops truncatus 39.16 1.00e-52 199.00
IUUC-Uma-129578 Ustilago maydis 32.86 6.00e-36 143.00
IUUC-Vda-129730 Verticillium dahliae 31.17 1.00e-32 132.00
IUUC-Vvi-130968 Vitis vinifera 78.28 2.00e-123 434.00
IUUC-Xtr-132203 Xenopus tropicalis 38.40 2.00e-51 194.00
IUUC-Xma-133972 Xiphophorus maculatus 38.40 1.00e-52 199.00
IUUC-Yli-134553 Yarrowia lipolytica 31.95 1.00e-27 116.00
IUUC-Zma-134941 Zea mays 70.19 2.00e-92 331.00
Created Date 25-Jun-2017

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