iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
microRNA	RAID2
Protein-protein Interaction
IID	Mentha
Post-translational Modifications (PTMs)
CPLM
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.60e-28	96.9	64	96

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sd.tllvsGsdDgtikvWDl 30
           gH d+v+c+         +l++G++Dg +++WDl
   Q: 64   GHRDGVSCF-GkhpKQlSTLATGAYDGEVRIWDL 96
           8*******6.2664224579*************7 PP

Organism

Drosophila melanogaster

Protein Sequence
(Fasta)

MKVKMISRNP DNYVRETKLQ QHKMPRNYDP SLHPLEGPRE YVRALNATKL DRVFAKPFVC 60
NLSGHRDGVS CFGKHPKQLS TLATGAYDGE VRIWDLANRI SSRNFVAHDG FVRGIAYTQN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCTCTGTATG GCAACACTGT AGCACGCACA TGTTGTTTAT GTTCGAAACT CACGATTAAT 60
TTTATTTTAC GCCGCAGAAA AGCTTAATAA ATGCAATCAG GATGAAGGTG AAAATGATTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR007287--Sof1
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04158--Sof1
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005730--C:nucleolus
GO:0032040--C:small-subunit processome
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0022008--P:neurogenesis
GO:0006909--P:phagocytosis

KEGG

dme:Dmel_CG7275

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002178	Ailuropoda melanoleuca	57.92	5.00e-159	553.00
IUUC-Atr-002799	Amborella trichopoda	43.68	5.00e-117	413.00
IUUC-Apl-003675	Anas platyrhynchos	55.98	5.00e-150	523.00
IUUC-Aca-004792	Anolis carolinensis	59.05	8.00e-164	568.00
IUUC-Aly-005998	Arabidopsis lyrata	43.02	4.00e-115	407.00
IUUC-Ath-007526	Arabidopsis thaliana	42.57	7.00e-114	403.00
IUUC-Ago-007774	Ashbya gossypii	43.51	3.00e-110	390.00
IUUC-Acl-008024	Aspergillus clavatus	43.93	2.00e-103	368.00
IUUC-Afu-008930	Aspergillus fumigatus	42.02	2.00e-102	365.00
IUUC-Ani-009370	Aspergillus nidulans	44.30	4.00e-108	384.00
IUUC-Ang-009827	Aspergillus niger	45.39	3.00e-108	384.00
IUUC-Aor-010060	Aspergillus oryzae	43.33	1.00e-103	369.00
IUUC-Ate-010434	Aspergillus terreus	43.89	1.00e-86	312.00
IUUC-Ame-011967	Astyanax mexicanus	57.44	2.00e-159	554.00
IUUC-Bgr-011989	Blumeria graminis	45.83	3.00e-108	384.00
IUUC-Bta-013291	Bos taurus	44.10	2.00e-106	378.00
IUUC-Bci-013868	Botrytis cinerea	43.30	5.00e-108	383.00
IUUC-Bdi-014343	Brachypodium distachyon	45.08	2.00e-112	398.00
IUUC-Bol-015740	Brassica oleracea	40.58	7.00e-105	373.00
IUUC-Bra-016689	Brassica rapa	42.82	5.00e-104	370.00
IUUC-Cel-018536	Caenorhabditis elegans	48.42	6.00e-119	419.00
IUUC-Cja-018779	Callithrix jacchus	59.50	5.00e-164	569.00
IUUC-Cfa-020105	Canis familiaris	59.05	7.00e-163	565.00
IUUC-Cpo-021538	Cavia porcellus	59.95	1.00e-162	565.00
IUUC-Cre-022798	Chlamydomonas reinhardtii	53.33	2.00e-38	150.00
IUUC-Csa-023492	Chlorocebus sabaeus	59.50	6.00e-164	569.00
IUUC-Cho-024497	Choloepus hoffmanni	45.89	1.00e-86	312.00
IUUC-Cin-025524	Ciona intestinalis	55.53	3.00e-147	513.00
IUUC-Csv-026197	Ciona savignyi	55.08	3.00e-146	510.00
IUUC-Cgl-026745	Colletotrichum gloeosporioides	41.01	2.00e-96	345.00
IUUC-Cne-026840	Cryptococcus neoformans	36.40	1.00e-76	281.00
IUUC-Cme-027111	Cyanidioschyzon merolae	32.95	3.00e-69	254.00
IUUC-Dre-027471	Danio rerio	59.31	2.00e-162	564.00
IUUC-Dno-029790	Dasypus novemcinctus	58.56	1.00e-133	468.00
IUUC-Dor-030971	Dipodomys ordii	46.15	1.00e-118	419.00
IUUC-Dse-031563	Dothistroma septosporum	43.74	5.00e-102	363.00
IUUC-Ete-033127	Echinops telfairi	55.41	2.00e-149	521.00
IUUC-Eca-033531	Equus caballus	57.48	8.00e-151	525.00
IUUC-Eeu-034663	Erinaceus europaeus	51.35	2.00e-134	471.00
IUUC-Fca-036258	Felis catus	59.28	1.00e-163	568.00
IUUC-Fal-037456	Ficedula albicollis	59.05	3.00e-155	540.00
IUUC-Fox-038025	Fusarium oxysporum	44.37	2.00e-104	372.00
IUUC-Fso-038344	Fusarium solani	44.32	4.00e-103	367.00
IUUC-Gmo-039643	Gadus morhua	57.47	1.00e-162	565.00
IUUC-Ggr-039816	Gaeumannomyces graminis	44.44	2.00e-104	371.00
IUUC-Gga-040143	Gallus gallus	59.73	2.00e-161	561.00
IUUC-Gac-041665	Gasterosteus aculeatus	60.56	5.00e-166	576.00
IUUC-Gma-043073	Glycine max	46.06	2.00e-115	408.00
IUUC-Ggo-045058	Gorilla gorilla	59.28	2.00e-163	568.00
IUUC-Hsa-046843	Homo sapiens	58.82	1.00e-162	565.00
IUUC-Hvu-047654	Hordeum vulgare	46.64	3.00e-67	247.00
IUUC-Itr-048822	Ictidomys tridecemlineatus	60.41	2.00e-166	577.00
IUUC-Kpa-049232	Komagataella pastoris	43.08	7.00e-108	383.00
IUUC-Lch-050542	Latimeria chalumnae	57.36	3.00e-164	570.00
IUUC-Lpe-051622	Leersia perrieri	43.02	2.00e-111	395.00
IUUC-Loc-052674	Lepisosteus oculatus	54.75	4.00e-152	530.00
IUUC-Lma-053108	Leptosphaeria maculans	44.49	2.00e-104	371.00
IUUC-Laf-053385	Loxodonta africana	59.28	4.00e-162	563.00
IUUC-Mcc-055151	Macaca mulatta	59.28	2.00e-163	567.00
IUUC-Meu-056230	Macropus eugenii	57.62	5.00e-75	273.00
IUUC-Mor-057013	Magnaporthe oryzae	42.96	1.00e-98	352.00
IUUC-Mpo-057530	Magnaporthe poae	45.15	2.00e-106	378.00
IUUC-Mtr-058187	Medicago truncatula	43.24	3.00e-114	404.00
IUUC-Mla-058964	Melampsora laricipopulina	36.19	3.00e-84	304.00
IUUC-Mga-059712	Meleagris gallopavo	59.19	6.00e-152	529.00
IUUC-Mvi-060370	Microbotryum violaceum	35.83	4.00e-77	281.00
IUUC-Mmr-061340	Microcebus murinus	56.50	3.00e-151	527.00
IUUC-Mdo-062978	Monodelphis domestica	60.41	2.00e-166	577.00
IUUC-Mmu-063439	Mus musculus	59.28	6.00e-163	566.00
IUUC-Mac-065129	Musa acuminata	43.58	2.00e-116	411.00
IUUC-Mpu-066548	Mustela putorius furo	52.36	4.00e-123	433.00
IUUC-Mlu-067660	Myotis lucifugus	59.73	7.00e-165	572.00
IUUC-Nfi-068455	Neosartorya fischeri	43.98	3.00e-106	377.00
IUUC-Ncr-068848	Neurospora crassa	41.40	2.00e-92	332.00
IUUC-Nle-069923	Nomascus leucogenys	59.50	2.00e-163	568.00
IUUC-Opr-070279	Ochotona princeps	49.47	2.00e-52	198.00
IUUC-Ont-072234	Oreochromis niloticus	61.31	1.00e-170	591.00
IUUC-Oan-073713	Ornithorhynchus anatinus	52.82	3.00e-62	230.00
IUUC-Ocu-073782	Oryctolagus cuniculus	60.18	2.00e-166	577.00
IUUC-Oba-075161	Oryza barthii	43.46	9.00e-113	399.00
IUUC-Obr-076868	Oryza brachyantha	43.46	3.00e-112	397.00
IUUC-Ogl-077062	Oryza glaberrima	43.46	9.00e-113	399.00
IUUC-Ogu-078308	Oryza glumaepatula	43.46	1.00e-112	399.00
IUUC-Oin-079378	Oryza indica	43.46	1.00e-112	399.00
IUUC-Olo-080638	Oryza longistaminata	41.69	2.00e-103	368.00
IUUC-Oni-082368	Oryza nivara	43.46	1.00e-112	399.00
IUUC-Opu-083628	Oryza punctata	43.46	1.00e-112	399.00
IUUC-Oru-085226	Oryza rufipogon	43.24	4.00e-112	397.00
IUUC-Osa-085368	Oryza sativa	39.11	3.00e-60	224.00
IUUC-Ola-086836	Oryzias latipes	59.73	1.00e-168	585.00
IUUC-Olu-087755	Ostreococcus lucimarinus	47.18	2.00e-116	411.00
IUUC-Oga-088170	Otolemur garnettii	59.28	2.00e-163	567.00
IUUC-Oar-089388	Ovis aries	58.60	5.00e-163	566.00
IUUC-Ptr-090494	Pan troglodytes	59.05	1.00e-162	565.00
IUUC-Pan-091697	Papio anubis	59.50	7.00e-164	569.00
IUUC-Psi-093916	Pelodiscus sinensis	57.47	5.00e-151	526.00
IUUC-Pno-095004	Phaeosphaeria nodorum	41.63	3.00e-95	341.00
IUUC-Ppa-095514	Physcomitrella patens	46.34	3.00e-122	431.00
IUUC-Pfo-097432	Poecilia formosa	59.62	4.00e-163	566.00
IUUC-Pab-098423	Pongo abelii	59.28	2.00e-163	568.00
IUUC-Pop-099649	Populus trichocarpa	42.57	4.00e-114	404.00
IUUC-Pca-100365	Procavia capensis	55.66	3.00e-145	508.00
IUUC-Ppe-101379	Prunus persica	43.75	5.00e-114	403.00
IUUC-Pva-102845	Pteropus vampyrus	58.60	2.00e-160	558.00
IUUC-Pgr-103469	Puccinia graminis	29.29	2.00e-53	202.00
IUUC-Ptt-103980	Puccinia triticina	34.33	1.00e-54	206.00
IUUC-Pte-104111	Pyrenophora teres	42.89	5.00e-101	360.00
IUUC-Pyt-104610	Pyrenophora triticirepentis	42.89	1.00e-100	358.00
IUUC-Rno-105082	Rattus norvegicus	59.50	9.00e-166	575.00
IUUC-Sce-106340	Saccharomyces cerevisiae	43.87	5.00e-112	397.00
IUUC-Sha-106584	Sarcophilus harrisii	59.05	6.00e-165	572.00
IUUC-Sja-107703	Schizosaccharomyces japonicus	41.89	6.00e-100	356.00
IUUC-Spo-108046	Schizosaccharomyces pombe	43.92	1.00e-106	378.00
IUUC-Ssl-108574	Sclerotinia sclerotiorum	43.52	4.00e-108	384.00
IUUC-Smo-109548	Selaginella moellendorffii	46.22	1.00e-122	432.00
IUUC-Sit-110242	Setaria italica	43.02	3.00e-110	391.00
IUUC-Sly-111762	Solanum lycopersicum	43.29	6.00e-112	396.00
IUUC-Stu-112156	Solanum tuberosum	44.21	3.00e-113	400.00
IUUC-Sbi-114739	Sorghum bicolor	44.12	2.00e-113	401.00
IUUC-Sre-114951	Sporisorium reilianum	36.90	1.00e-95	342.00
IUUC-Ssc-115510	Sus scrofa	59.28	1.00e-163	568.00
IUUC-Tgu-117234	Taeniopygia guttata	58.71	1.00e-144	505.00
IUUC-Tru-117986	Takifugu rubripes	58.52	5.00e-163	566.00
IUUC-Tsy-119252	Tarsius syrichta	57.28	8.00e-149	519.00
IUUC-Tni-119785	Tetraodon nigroviridis	59.95	3.00e-158	550.00
IUUC-Tca-121222	Theobroma cacao	44.57	6.00e-115	406.00
IUUC-Tre-122243	Trichoderma reesei	42.16	1.00e-102	365.00
IUUC-Tvi-122293	Trichoderma virens	42.60	1.00e-102	365.00
IUUC-Tae-125191	Triticum aestivum	42.26	1.00e-104	372.00
IUUC-Tur-126098	Triticum urartu	42.56	3.00e-98	351.00
IUUC-Tme-127200	Tuber melanosporum	46.00	3.00e-118	417.00
IUUC-Tbe-127568	Tupaia belangeri	56.64	9.00e-77	280.00
IUUC-Ttr-129185	Tursiops truncatus	52.49	3.00e-137	481.00
IUUC-Uma-129353	Ustilago maydis	37.97	4.00e-97	347.00
IUUC-Vda-129768	Verticillium dahliae	42.32	1.00e-99	355.00
IUUC-Vpa-130572	Vicugna pacos	58.82	4.00e-162	563.00
IUUC-Vvi-131555	Vitis vinifera	45.82	9.00e-116	409.00
IUUC-Xtr-132263	Xenopus tropicalis	61.81	3.00e-141	493.00
IUUC-Xma-133925	Xiphophorus maculatus	59.62	5.00e-163	566.00
IUUC-Yli-134384	Yarrowia lipolytica	43.75	4.00e-107	380.00
IUUC-Zma-135616	Zea mays	45.08	2.00e-112	398.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence