iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007561

UUCD1 version

UUC-ArT-01433

Ensembl Protein ID

AT4G28890.1

UniProt Accession

Q5XF85; Q4TU11; Q9SV57; ATL42_ARATH

Genbank Protein ID

AAY57611.1; CAB43903.1; CAB81477.1; AEE85559.1; AAU84668.1; AAV43780.1

Protein Name

E3 ubiquitin-protein ligase ATL42; RING-H2 finger protein ATL42; RING-type E3 ubiquitin transferase ATL42

Genbank Nucleotide ID

DQ059125; AL078469; AL161573; CP002687; BX828195; BT020178

Gene Name

ATL42; At4g28890; F25O24.10

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT4G28890	AT4G28890.1	AT4G28890.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	15644464

Classification

Family	E-value	Score	Start	End
E3 activity/RING/RING	1.30e-07	32.9	123	165

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           C++Cl+ f+    +++lp C H+fh  C+ +w        ++++CPlCr
   Q: 123  CSVCLSKFESVeiLRLLPkCRHAFHIGCIDQW------LEQHATCPLCR 165
           ********6623355666**************......**********8 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro.

Protein Sequence
(Fasta)

MYQIFFFFLP LLHSYASAQT PPPFRNGDLV ANFEPSLAVV TGVLAIMFAL TFVLLVYAKC 60
CHIDLRSGSG DRRRHDRRLR QGIFFNRSTA SSDRFSGLDK TAIESLPLFR FSALKGSKQG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCGAAAGATA AAATTGTATT TAATTAAATG GAGAGAATAG TAGAAGACAA ATAGAGCATA 60
GATAAAAAGC AATAGCATAC AAATTGTTGT CACGTATATG ACGTAATTGT ATTAGTTTAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0732--Signal
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0016567--P:protein ubiquitination

KEGG

ath:AT4G28890

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002959	Amborella trichopoda	50.00	3.00e-47	182.00
IUUC-Aly-005935	Arabidopsis lyrata	93.79	0.00e+00	736.00
IUUC-Bol-015814	Brassica oleracea	76.83	2.00e-180	624.00
IUUC-Bra-017519	Brassica rapa	77.93	3.00e-177	613.00
IUUC-Gma-043589	Glycine max	47.32	5.00e-89	320.00
IUUC-Mac-064747	Musa acuminata	35.82	2.00e-62	232.00
IUUC-Obr-076167	Oryza brachyantha	33.33	4.00e-33	134.00
IUUC-Pop-099837	Populus trichocarpa	45.27	1.00e-80	292.00
IUUC-Ppe-101585	Prunus persica	50.48	9.00e-81	293.00
IUUC-Sit-110634	Setaria italica	34.24	1.00e-55	209.00
IUUC-Sly-111270	Solanum lycopersicum	42.89	1.00e-80	292.00
IUUC-Tca-121197	Theobroma cacao	48.66	4.00e-95	340.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence