iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007056

Ensembl Protein ID

AT1G10170.1

UniProt Accession

Q9SY59; NFXL1_ARATH

Genbank Protein ID

AAD32867.1; AEE28549.1; ANM60817.1

Protein Name

NF-X1-type zinc finger protein NFXL1

Genbank Nucleotide ID

AC005489; CP002684; CP002684

Gene Name

NFXL1; At1g10170; F14N23.5

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G10170	AT1G10170.1	AT1G10170.1
AT1G10170	AT1G10170.2	AT1G10170.2
AT1G10170	AT1G10170.4	AT1G10170.4

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	36.65	2.00e-129	461.00	IUUC-Hsa-046870

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Arabidopsis thaliana

Functional Description
(View)

Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi).

Protein Sequence
(Fasta)

MSFQVRRDRS DDRSHRFNHQ QTWIPRNSST SSVVVNEPLL PPNTDRNSET LDAGSASRPV 60
YLQRQHNASG PPSYNHHQRS SNIGPPPPNQ HRRYNAPDNQ HQRSDNIGPP QPNQHRRYNA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGACAAGCCG GTGAAAAAGA AAAGTCGTAC GCGACTCTCT CTCTCTATCT TTTATTTCCT 60
TTGGGAGCAA GGCGGTCTAT CACTTTCAGT CGCTATATAT AATCTTCCTC ATCGCTCCAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0238--DNA-binding
KW-0436--Ligase
KW-0479--Metal-binding
KW-0539--Nucleus
KW-0611--Plant defense
KW-1185--Reference proteome
KW-0677--Repeat
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR034078--NFX1_fam
IPR001374--R3H_dom
IPR019786--Zinc_finger_PHD-type_CS
IPR000967--Znf_NFX1
IPR019787--Znf_PHD-finger
IPR001841--Znf_RING

PROSITE

PS01359--ZF_PHD_1
PS50016--ZF_PHD_2
PS50089--ZF_RING_2

Pfam

PF01422--zf-NF-X1

SMART

SM00438--ZnF_NFX

Gene Ontology

GO:0005634--C:nucleus
GO:0016874--F:ligase activity
GO:0003729--F:mRNA binding
GO:0000977--F:RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001078--F:transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0008270--F:zinc ion binding
GO:0042742--P:defense response to bacterium
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter
GO:0016567--P:protein ubiquitination
GO:0010310--P:regulation of hydrogen peroxide metabolic process
GO:0009642--P:response to light intensity
GO:0010188--P:response to microbial phytotoxin
GO:0009651--P:response to salt stress
GO:0009697--P:salicylic acid biosynthetic process
GO:0006366--P:transcription from RNA polymerase II promoter

KEGG

ath:AT1G10170

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000224	Aegilops tauschii	59.62	0.00e+00	838.00
IUUC-Aml-001716	Ailuropoda melanoleuca	36.82	7.00e-124	437.00
IUUC-Atr-002895	Amborella trichopoda	57.34	0.00e+00	1152.00
IUUC-Apl-003650	Anas platyrhynchos	37.11	1.00e-123	437.00
IUUC-Aca-004313	Anolis carolinensis	36.81	4.00e-131	461.00
IUUC-Aly-006515	Arabidopsis lyrata	89.57	0.00e+00	2052.00
IUUC-Ago-007777	Ashbya gossypii	31.32	2.00e-86	313.00
IUUC-Acl-008068	Aspergillus clavatus	34.36	8.00e-75	275.00
IUUC-Afl-008499	Aspergillus flavus	33.24	8.00e-41	160.00
IUUC-Afu-009016	Aspergillus fumigatus	33.60	2.00e-111	397.00
IUUC-Ani-009477	Aspergillus nidulans	32.61	2.00e-108	386.00
IUUC-Ang-009605	Aspergillus niger	33.66	1.00e-113	403.00
IUUC-Aor-010166	Aspergillus oryzae	33.18	6.00e-47	182.00
IUUC-Ame-010640	Astyanax mexicanus	38.08	1.00e-126	447.00
IUUC-Bgr-012024	Blumeria graminis	29.88	1.00e-106	380.00
IUUC-Bta-012789	Bos taurus	37.93	4.00e-121	428.00
IUUC-Bci-013768	Botrytis cinerea	32.80	5.00e-106	378.00
IUUC-Bdi-014723	Brachypodium distachyon	57.62	0.00e+00	1140.00
IUUC-Bol-015394	Brassica oleracea	78.67	0.00e+00	1850.00
IUUC-Bra-017266	Brassica rapa	85.22	0.00e+00	1843.00
IUUC-Cel-018668	Caenorhabditis elegans	34.18	1.00e-116	414.00
IUUC-Cja-019769	Callithrix jacchus	34.38	4.00e-113	402.00
IUUC-Cfa-020727	Canis familiaris	36.45	3.00e-123	436.00
IUUC-Cpo-021741	Cavia porcellus	37.39	4.00e-128	452.00
IUUC-Csa-024054	Chlorocebus sabaeus	37.31	1.00e-124	440.00
IUUC-Cho-025031	Choloepus hoffmanni	35.36	2.00e-100	360.00
IUUC-Cin-025164	Ciona intestinalis	32.47	9.00e-116	410.00
IUUC-Csv-026260	Ciona savignyi	33.83	4.00e-119	422.00
IUUC-Cgl-026451	Colletotrichum gloeosporioides	32.47	2.00e-69	257.00
IUUC-Cne-026923	Cryptococcus neoformans	29.50	5.00e-66	245.00
IUUC-Dre-028227	Danio rerio	38.59	3.00e-137	482.00
IUUC-Dno-029830	Dasypus novemcinctus	35.53	4.00e-116	412.00
IUUC-Dor-030436	Dipodomys ordii	32.78	8.00e-83	301.00
IUUC-Dse-031485	Dothistroma septosporum	34.86	1.00e-110	394.00
IUUC-Dme-031875	Drosophila melanogaster	34.74	2.00e-106	380.00
IUUC-Eca-033415	Equus caballus	36.91	2.00e-54	206.00
IUUC-Eeu-034528	Erinaceus europaeus	36.00	2.00e-74	273.00
IUUC-Fca-036238	Felis catus	37.95	2.00e-113	402.00
IUUC-Fal-037124	Ficedula albicollis	36.95	6.00e-133	468.00
IUUC-Fox-038075	Fusarium oxysporum	28.79	7.00e-08	52.40
IUUC-Fso-038310	Fusarium solani	32.70	3.00e-97	349.00
IUUC-Gmo-039506	Gadus morhua	37.45	7.00e-120	424.00
IUUC-Ggr-039984	Gaeumannomyces graminis	35.04	2.00e-113	402.00
IUUC-Gga-040674	Gallus gallus	37.39	6.00e-121	427.00
IUUC-Gac-041416	Gasterosteus aculeatus	37.88	1.00e-120	427.00
IUUC-Gma-043625	Glycine max	56.10	0.00e+00	1256.00
IUUC-Ggo-045017	Gorilla gorilla	36.80	1.00e-122	433.00
IUUC-Hsa-046870	Homo sapiens	37.08	2.00e-124	439.00
IUUC-Hvu-047466	Hordeum vulgare	56.76	0.00e+00	805.00
IUUC-Itr-048703	Ictidomys tridecemlineatus	32.18	2.00e-18	86.30
IUUC-Kpa-049244	Komagataella pastoris	29.20	7.00e-66	244.00
IUUC-Lch-050376	Latimeria chalumnae	38.84	1.00e-127	450.00
IUUC-Lpe-050955	Leersia perrieri	55.09	0.00e+00	998.00
IUUC-Loc-051948	Lepisosteus oculatus	37.88	2.00e-135	476.00
IUUC-Lma-052950	Leptosphaeria maculans	32.71	1.00e-102	367.00
IUUC-Laf-054206	Loxodonta africana	37.01	9.00e-71	260.00
IUUC-Mcc-055005	Macaca mulatta	37.31	1.00e-124	440.00
IUUC-Meu-056120	Macropus eugenii	42.21	4.00e-57	216.00
IUUC-Mor-057238	Magnaporthe oryzae	35.19	1.00e-119	423.00
IUUC-Mpo-057574	Magnaporthe poae	34.25	6.00e-113	401.00
IUUC-Mtr-057823	Medicago truncatula	59.55	0.00e+00	1092.00
IUUC-Mla-058822	Melampsora laricipopulina	31.65	3.00e-88	319.00
IUUC-Mga-059785	Meleagris gallopavo	41.99	3.00e-75	275.00
IUUC-Mvi-060543	Microbotryum violaceum	28.86	2.00e-90	327.00
IUUC-Mmr-060611	Microcebus murinus	35.39	6.00e-114	404.00
IUUC-Mdo-062719	Monodelphis domestica	34.33	1.00e-129	457.00
IUUC-Mmu-064376	Mus musculus	36.90	3.00e-121	429.00
IUUC-Mac-064834	Musa acuminata	56.84	0.00e+00	1017.00
IUUC-Mpu-066298	Mustela putorius furo	36.65	3.00e-123	436.00
IUUC-Mlu-067546	Myotis lucifugus	35.06	1.00e-121	430.00
IUUC-Nfi-068388	Neosartorya fischeri	33.60	2.00e-117	416.00
IUUC-Ncr-068875	Neurospora crassa	32.49	2.00e-104	373.00
IUUC-Nle-069813	Nomascus leucogenys	36.85	9.00e-124	437.00
IUUC-Opr-070995	Ochotona princeps	36.99	5.00e-119	421.00
IUUC-Ont-072084	Oreochromis niloticus	39.06	1.00e-126	446.00
IUUC-Oan-073545	Ornithorhynchus anatinus	35.80	3.00e-113	402.00
IUUC-Ocu-074092	Oryctolagus cuniculus	34.24	3.00e-118	419.00
IUUC-Oba-075828	Oryza barthii	57.81	0.00e+00	1082.00
IUUC-Obr-076373	Oryza brachyantha	59.59	0.00e+00	857.00
IUUC-Ogl-077043	Oryza glaberrima	59.39	0.00e+00	1119.00
IUUC-Ogu-078647	Oryza glumaepatula	59.34	0.00e+00	1103.00
IUUC-Oin-079793	Oryza indica	59.90	0.00e+00	884.00
IUUC-Olo-080815	Oryza longistaminata	60.28	0.00e+00	1083.00
IUUC-Ome-081650	Oryza meridionalis	59.28	0.00e+00	1146.00
IUUC-Oni-082708	Oryza nivara	59.38	0.00e+00	1145.00
IUUC-Opu-084078	Oryza punctata	59.86	0.00e+00	1103.00
IUUC-Oru-084549	Oryza rufipogon	59.48	0.00e+00	1147.00
IUUC-Osa-086095	Oryza sativa	60.42	0.00e+00	1012.00
IUUC-Olu-087617	Ostreococcus lucimarinus	27.45	2.00e-03	37.40
IUUC-Oga-088453	Otolemur garnettii	36.23	3.00e-120	426.00
IUUC-Oar-089769	Ovis aries	38.18	2.00e-122	432.00
IUUC-Ptr-090803	Pan troglodytes	37.08	2.00e-124	439.00
IUUC-Pan-092169	Papio anubis	37.31	5.00e-127	448.00
IUUC-Psi-094065	Pelodiscus sinensis	36.68	4.00e-132	465.00
IUUC-Pma-094592	Petromyzon marinus	36.01	3.00e-116	412.00
IUUC-Pno-095016	Phaeosphaeria nodorum	31.21	7.00e-18	84.00
IUUC-Ppa-095597	Physcomitrella patens	49.65	0.00e+00	919.00
IUUC-Pfo-096959	Poecilia formosa	34.95	2.00e-129	456.00
IUUC-Pab-097732	Pongo abelii	38.36	4.00e-96	345.00
IUUC-Pop-099062	Populus trichocarpa	68.36	0.00e+00	1363.00
IUUC-Pca-100219	Procavia capensis	30.80	3.00e-68	253.00
IUUC-Ppe-101695	Prunus persica	67.21	0.00e+00	1358.00
IUUC-Pva-102402	Pteropus vampyrus	37.13	6.00e-94	338.00
IUUC-Pgr-103317	Puccinia graminis	29.36	5.00e-84	305.00
IUUC-Ptt-103771	Puccinia triticina	30.04	6.00e-87	315.00
IUUC-Pte-104189	Pyrenophora teres	25.20	6.00e-07	48.90
IUUC-Pyt-104801	Pyrenophora triticirepentis	33.87	1.00e-110	394.00
IUUC-Rno-105721	Rattus norvegicus	36.99	3.00e-127	449.00
IUUC-Sce-106350	Saccharomyces cerevisiae	27.93	4.00e-75	276.00
IUUC-Sha-106801	Sarcophilus harrisii	36.56	7.00e-131	461.00
IUUC-Sja-107692	Schizosaccharomyces japonicus	31.30	2.00e-98	353.00
IUUC-Spo-108253	Schizosaccharomyces pombe	29.89	4.00e-101	362.00
IUUC-Ssl-108587	Sclerotinia sclerotiorum	36.25	2.00e-74	273.00
IUUC-Smo-108865	Selaginella moellendorffii	50.29	0.00e+00	797.00
IUUC-Sit-110153	Setaria italica	59.47	0.00e+00	1128.00
IUUC-Sly-111638	Solanum lycopersicum	66.70	0.00e+00	1278.00
IUUC-Stu-112099	Solanum tuberosum	64.77	0.00e+00	1286.00
IUUC-Sar-113030	Sorex araneus	32.93	1.00e-39	158.00
IUUC-Sbi-113944	Sorghum bicolor	58.06	0.00e+00	1138.00
IUUC-Sre-115206	Sporisorium reilianum	30.58	1.00e-99	357.00
IUUC-Ssc-115729	Sus scrofa	33.15	3.00e-17	82.80
IUUC-Tgu-117520	Taeniopygia guttata	33.63	9.00e-101	360.00
IUUC-Tru-118487	Takifugu rubripes	38.55	2.00e-120	426.00
IUUC-Tsy-119363	Tarsius syrichta	32.18	8.00e-89	321.00
IUUC-Tca-121813	Theobroma cacao	67.87	0.00e+00	1382.00
IUUC-Tre-122248	Trichoderma reesei	33.70	1.00e-99	357.00
IUUC-Tvi-122462	Trichoderma virens	34.16	2.00e-106	380.00
IUUC-Tae-123637	Triticum aestivum	56.27	0.00e+00	1071.00
IUUC-Tur-126173	Triticum urartu	59.86	0.00e+00	1019.00
IUUC-Tme-127213	Tuber melanosporum	30.12	3.00e-93	336.00
IUUC-Tbe-127399	Tupaia belangeri	37.95	9.00e-74	271.00
IUUC-Ttr-128798	Tursiops truncatus	35.70	3.00e-66	246.00
IUUC-Uma-129421	Ustilago maydis	34.87	6.00e-97	348.00
IUUC-Vda-129863	Verticillium dahliae	32.50	2.00e-97	350.00
IUUC-Vvi-131615	Vitis vinifera	66.70	0.00e+00	1380.00
IUUC-Xtr-132309	Xenopus tropicalis	38.36	7.00e-123	434.00
IUUC-Xma-133235	Xiphophorus maculatus	37.84	8.00e-124	437.00
IUUC-Yli-134536	Yarrowia lipolytica	30.42	1.00e-87	317.00
IUUC-Zma-135358	Zea mays	57.23	0.00e+00	1075.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence