iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
Mentha
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/U-box	U-box	16531496; 16699537

Classification

Family	E-value	Score	Start	End
E3 activity/RING/U-box	3.50e-31	108.0	305	377

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           vp++f+CpIsl+lM+dPv++++G+tydr+sI++w+++g+ tcP+t+q l ++ +vPn +l++li +wc ++++
   Q: 305  VPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQMLMDSRIVPNRALKNLIVQWCTASGI 377
           8*******************************************************************98875 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as an E3 ubiquitin ligase.

Protein Sequence
(Fasta)

MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR 60
SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE STALLCLKEL YLLLYRSKIL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAAAAGACA AATCTAGTAA TAAAAAGATT AGATTCTAAT CCGTTACATA TTGCCAGTAG 60
TATTGACTTT TACTGGGAAA AACAAAAAAA CTTTCGAGAG AGAGAAAAAA ATAAAAAAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity
GO:0009814--P:defense response, incompatible interaction
GO:0016567--P:protein ubiquitination

KEGG

ath:AT1G29340

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001129	Aegilops tauschii	47.40	7.00e-134	470.00
IUUC-Aly-006027	Arabidopsis lyrata	95.24	0.00e+00	1268.00
IUUC-Bdi-014675	Brachypodium distachyon	46.33	9.00e-138	483.00
IUUC-Bol-015901	Brassica oleracea	84.88	0.00e+00	1054.00
IUUC-Bra-017296	Brassica rapa	84.00	0.00e+00	1030.00
IUUC-Gma-043020	Glycine max	69.96	0.00e+00	875.00
IUUC-Hvu-047822	Hordeum vulgare	46.09	4.00e-145	508.00
IUUC-Lpe-051105	Leersia perrieri	48.81	1.00e-143	503.00
IUUC-Mtr-057764	Medicago truncatula	69.50	0.00e+00	857.00
IUUC-Mac-065609	Musa acuminata	50.31	3.00e-160	557.00
IUUC-Oba-075480	Oryza barthii	49.91	2.00e-135	475.00
IUUC-Obr-076773	Oryza brachyantha	55.70	2.00e-88	318.00
IUUC-Ogl-077156	Oryza glaberrima	47.69	1.00e-144	506.00
IUUC-Ogu-078640	Oryza glumaepatula	47.69	9.00e-145	506.00
IUUC-Oin-079253	Oryza indica	45.63	2.00e-132	465.00
IUUC-Olo-080903	Oryza longistaminata	49.91	2.00e-135	475.00
IUUC-Ome-081982	Oryza meridionalis	47.85	1.00e-145	509.00
IUUC-Oni-082824	Oryza nivara	47.69	9.00e-145	506.00
IUUC-Opu-083758	Oryza punctata	47.85	3.00e-144	504.00
IUUC-Oru-084718	Oryza rufipogon	47.69	9.00e-145	506.00
IUUC-Osa-085662	Oryza sativa	48.64	4.00e-142	497.00
IUUC-Ppa-095502	Physcomitrella patens	41.65	2.00e-109	389.00
IUUC-Pop-099239	Populus trichocarpa	71.11	0.00e+00	889.00
IUUC-Ppe-101890	Prunus persica	71.70	0.00e+00	857.00
IUUC-Smo-109110	Selaginella moellendorffii	38.76	2.00e-108	386.00
IUUC-Sit-110022	Setaria italica	47.64	3.00e-142	498.00
IUUC-Sly-111463	Solanum lycopersicum	67.53	0.00e+00	820.00
IUUC-Stu-111976	Solanum tuberosum	67.12	0.00e+00	822.00
IUUC-Sbi-114100	Sorghum bicolor	48.17	5.00e-147	514.00
IUUC-Tca-121221	Theobroma cacao	73.43	0.00e+00	932.00
IUUC-Tae-124437	Triticum aestivum	46.57	5.00e-145	507.00
IUUC-Tur-126627	Triticum urartu	50.00	3.00e-128	451.00
IUUC-Vvi-131159	Vitis vinifera	67.26	0.00e+00	821.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence