iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.30e-29	99.7	625	662

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDlrtgvll 36
           H+ +v++++    d tll+sGsdDgt+k+W++ +gv++
   Q: 625  HKKRVWSIDIssADpTLLASGSDDGTVKLWSINQGVSI 662
           8999******99667****************9999875 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Repressor of photomorphogenesis in the light. Probably part of the COP1/SPA E3 ubiquitin-protein ligase complex.

Protein Sequence
(Fasta)

MEGSSNSNSR GFNTSGVSDR NTEFLPVERL TTRSKPSSHV DEYVRSLFGS TSTHKSGEDD 60
SLGIDPFVRS LEWGDVSLRQ WLDKPERSVD VFECLHVFRQ IVEIVNAAHS QGIVVHNVRP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TGATTATCAA TATTGAAAAA AAAACTGAAC TGAGAGATAT ATTATATAAA TATATTAAAG 60
AACGATTTCG ACAGTGAATC GTTTCTTTCA GCAGTCGTTT TTTTGTTTTT ATTCTAAAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0547--Nucleotide-binding
KW-0539--Nucleus
KW-0607--Phytochrome signaling pathway
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR011009--Kinase-like_dom
IPR000719--Prot_kinase_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50011--PROTEIN_KINASE_DOM
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00220--S_TKc
SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus
GO:0005524--F:ATP binding
GO:0042802--F:identical protein binding
GO:0004672--F:protein kinase activity
GO:0009585--P:red, far-red light phototransduction

KEGG

ath:AT3G15354

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005541	Arabidopsis lyrata	95.03	0.00e+00	1528.00
IUUC-Bol-016003	Brassica oleracea	84.10	0.00e+00	1368.00
IUUC-Bra-017508	Brassica rapa	82.93	0.00e+00	1278.00
IUUC-Gma-043315	Glycine max	63.60	0.00e+00	1031.00
IUUC-Mtr-058605	Medicago truncatula	61.81	0.00e+00	1029.00
IUUC-Mac-065222	Musa acuminata	55.20	0.00e+00	760.00
IUUC-Olu-087702	Ostreococcus lucimarinus	47.27	1.00e-78	285.00
IUUC-Ppa-096019	Physcomitrella patens	52.37	0.00e+00	671.00
IUUC-Pop-099475	Populus trichocarpa	62.33	0.00e+00	1027.00
IUUC-Ppe-101650	Prunus persica	65.08	0.00e+00	1100.00
IUUC-Smo-109315	Selaginella moellendorffii	50.13	0.00e+00	714.00
IUUC-Sly-111108	Solanum lycopersicum	64.91	0.00e+00	944.00
IUUC-Stu-112348	Solanum tuberosum	61.41	0.00e+00	878.00
IUUC-Tca-121705	Theobroma cacao	66.18	0.00e+00	1065.00
IUUC-Tur-126499	Triticum urartu	58.10	0.00e+00	680.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence