iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Gga-040972

Ensembl Protein ID

ENSGALP00000005090.5

UniProt Accession

E1C0J4; E1C0J4_CHICK

Genbank Protein ID

ENSGALP00000005090

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AADN04000367

Gene Name

UPF1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSGALG00000003220.5	ENSGALT00000005099.5	ENSGALP00000005090.5

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/Other	57.82	0.00e+00	968.00	IUUC-Sce-106206

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Gallus gallus

Protein Sequence
(Fasta)

MSVEAYGPSS QTLTFLDTEE AELLGADTQG SEFEFTDFTL PSQTQTPPGP GQAGPGQAQG 60
APGAGQGPAG PIEAQVNGPD GILQNGAVDD NVAKTSQLLA ELNFEEDEED TYYTKDLPVH 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAGCGTGG AAGCGTACGG CCCCAGCTCG CAGACCCTCA CCTTCCTGGA CACGGAGGAG 60
GCCGAGCTGC TCGGCGCGGA CACGCAGGGC TCCGAGTTCG AGTTCACCGA CTTCACCCTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR006935--Helicase/UvrB_N
IPR027417--P-loop_NTPase
IPR018999--RNA-helicase_UPF1_UPF2-interct

Pfam

PF04851--ResIII
PF09416--UPF1_Zn_bind

Gene Ontology

GO:0000785--C:chromatin
GO:0005737--C:cytoplasm
GO:0035145--C:exon-exon junction complex
GO:0000784--C:nuclear chromosome, telomeric region
GO:0005654--C:nucleoplasm
GO:0044530--C:supraspliceosomal complex
GO:0005524--F:ATP binding
GO:0004004--F:ATP-dependent RNA helicase activity
GO:0003682--F:chromatin binding
GO:0003723--F:RNA binding
GO:0042162--F:telomeric DNA binding
GO:0008270--F:zinc ion binding
GO:0061158--P:3'-UTR-mediated mRNA destabilization
GO:0071347--P:cellular response to interleukin-1
GO:0071222--P:cellular response to lipopolysaccharide
GO:0006281--P:DNA repair
GO:0071044--P:histone mRNA catabolic process
GO:0000294--P:nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay
GO:0000184--P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0061014--P:positive regulation of mRNA catabolic process
GO:0006449--P:regulation of translational termination
GO:0032201--P:telomere maintenance via semi-conservative replication

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000680	Aegilops tauschii	71.47	0.00e+00	1178.00
IUUC-Aml-002008	Ailuropoda melanoleuca	96.19	0.00e+00	2109.00
IUUC-Atr-002632	Amborella trichopoda	72.27	0.00e+00	1269.00
IUUC-Apl-003997	Anas platyrhynchos	98.96	0.00e+00	2039.00
IUUC-Aca-004322	Anolis carolinensis	31.55	6.00e-54	205.00
IUUC-Aly-006521	Arabidopsis lyrata	71.81	0.00e+00	1254.00
IUUC-Ath-007059	Arabidopsis thaliana	71.57	0.00e+00	1254.00
IUUC-Ago-007801	Ashbya gossypii	56.99	0.00e+00	952.00
IUUC-Acl-008312	Aspergillus clavatus	69.06	0.00e+00	1195.00
IUUC-Afl-008429	Aspergillus flavus	68.18	0.00e+00	1195.00
IUUC-Afu-009092	Aspergillus fumigatus	64.04	0.00e+00	1194.00
IUUC-Ani-009317	Aspergillus nidulans	69.06	0.00e+00	1196.00
IUUC-Ang-009783	Aspergillus niger	60.22	0.00e+00	1196.00
IUUC-Aor-010178	Aspergillus oryzae	68.18	0.00e+00	1195.00
IUUC-Ate-010294	Aspergillus terreus	60.36	0.00e+00	1201.00
IUUC-Ame-010774	Astyanax mexicanus	74.31	0.00e+00	1225.00
IUUC-Bgr-012293	Blumeria graminis	67.41	0.00e+00	1187.00
IUUC-Bta-012382	Bos taurus	96.37	0.00e+00	2116.00
IUUC-Bci-013937	Botrytis cinerea	67.66	0.00e+00	1183.00
IUUC-Bdi-014612	Brachypodium distachyon	71.21	0.00e+00	1264.00
IUUC-Bol-015145	Brassica oleracea	70.74	0.00e+00	1244.00
IUUC-Bra-017370	Brassica rapa	69.30	0.00e+00	1209.00
IUUC-Cel-018240	Caenorhabditis elegans	59.06	0.00e+00	998.00
IUUC-Cja-019892	Callithrix jacchus	98.66	0.00e+00	2038.00
IUUC-Cfa-020700	Canis familiaris	96.19	0.00e+00	2115.00
IUUC-Cpo-021510	Cavia porcellus	96.28	0.00e+00	2135.00
IUUC-Cre-022731	Chlamydomonas reinhardtii	59.35	0.00e+00	995.00
IUUC-Csa-023665	Chlorocebus sabaeus	97.05	0.00e+00	2115.00
IUUC-Cin-025798	Ciona intestinalis	83.93	0.00e+00	1352.00
IUUC-Csv-025901	Ciona savignyi	71.77	0.00e+00	1613.00
IUUC-Cgl-026653	Colletotrichum gloeosporioides	58.70	0.00e+00	1162.00
IUUC-Cne-027014	Cryptococcus neoformans	62.99	0.00e+00	1200.00
IUUC-Dre-028705	Danio rerio	93.21	0.00e+00	2059.00
IUUC-Dor-030369	Dipodomys ordii	95.58	0.00e+00	1979.00
IUUC-Dme-031767	Drosophila melanogaster	70.81	0.00e+00	1406.00
IUUC-Ete-032800	Echinops telfairi	33.80	3.00e-53	203.00
IUUC-Eca-033840	Equus caballus	98.94	0.00e+00	2037.00
IUUC-Fca-035466	Felis catus	98.01	0.00e+00	2030.00
IUUC-Fal-037548	Ficedula albicollis	99.33	0.00e+00	2016.00
IUUC-Fox-038023	Fusarium oxysporum	58.41	0.00e+00	1144.00
IUUC-Gmo-039285	Gadus morhua	91.15	0.00e+00	1994.00
IUUC-Ggr-039810	Gaeumannomyces graminis	66.50	0.00e+00	1177.00
IUUC-Gac-042075	Gasterosteus aculeatus	91.25	0.00e+00	2025.00
IUUC-Gma-042713	Glycine max	72.53	0.00e+00	1298.00
IUUC-Ggo-045398	Gorilla gorilla	98.94	0.00e+00	2035.00
IUUC-Hsa-046152	Homo sapiens	97.05	0.00e+00	2115.00
IUUC-Hvu-047555	Hordeum vulgare	73.03	0.00e+00	735.00
IUUC-Itr-048247	Ictidomys tridecemlineatus	98.11	0.00e+00	1996.00
IUUC-Kpa-049205	Komagataella pastoris	50.19	0.00e+00	775.00
IUUC-Lch-049587	Latimeria chalumnae	97.85	0.00e+00	1328.00
IUUC-Lpe-051059	Leersia perrieri	73.16	0.00e+00	1270.00
IUUC-Loc-051911	Lepisosteus oculatus	93.83	0.00e+00	2056.00
IUUC-Lma-053007	Leptosphaeria maculans	61.50	0.00e+00	1162.00
IUUC-Laf-054234	Loxodonta africana	95.92	0.00e+00	2100.00
IUUC-Mcc-054762	Macaca mulatta	96.19	0.00e+00	2110.00
IUUC-Meu-056677	Macropus eugenii	95.49	0.00e+00	900.00
IUUC-Mor-057147	Magnaporthe oryzae	67.04	0.00e+00	1169.00
IUUC-Mpo-057314	Magnaporthe poae	66.50	0.00e+00	1177.00
IUUC-Mtr-058329	Medicago truncatula	62.32	0.00e+00	1298.00
IUUC-Mla-059094	Melampsora laricipopulina	67.49	0.00e+00	681.00
IUUC-Mga-060126	Meleagris gallopavo	98.48	0.00e+00	2016.00
IUUC-Mvi-060373	Microbotryum violaceum	67.23	0.00e+00	1272.00
IUUC-Mmr-060628	Microcebus murinus	96.10	0.00e+00	2107.00
IUUC-Mdo-061858	Monodelphis domestica	99.71	0.00e+00	2050.00
IUUC-Mmu-064116	Mus musculus	96.42	0.00e+00	2108.00
IUUC-Mac-065136	Musa acuminata	71.57	0.00e+00	1261.00
IUUC-Mpu-066463	Mustela putorius furo	97.14	0.00e+00	2123.00
IUUC-Mlu-068098	Myotis lucifugus	96.86	0.00e+00	2110.00
IUUC-Nfi-068370	Neosartorya fischeri	64.04	0.00e+00	1195.00
IUUC-Ncr-068792	Neurospora crassa	61.12	0.00e+00	1167.00
IUUC-Nle-070102	Nomascus leucogenys	98.85	0.00e+00	2028.00
IUUC-Opr-070620	Ochotona princeps	91.06	0.00e+00	1859.00
IUUC-Ont-072685	Oreochromis niloticus	92.40	0.00e+00	2025.00
IUUC-Oan-073665	Ornithorhynchus anatinus	95.84	0.00e+00	2099.00
IUUC-Ocu-074154	Oryctolagus cuniculus	33.41	2.00e-55	211.00
IUUC-Oba-075075	Oryza barthii	63.56	0.00e+00	1016.00
IUUC-Obr-076183	Oryza brachyantha	66.79	0.00e+00	1092.00
IUUC-Ogl-077691	Oryza glaberrima	68.36	0.00e+00	1269.00
IUUC-Ogu-078423	Oryza glumaepatula	68.36	0.00e+00	1269.00
IUUC-Oin-080107	Oryza indica	68.36	0.00e+00	1269.00
IUUC-Olo-080269	Oryza longistaminata	67.86	0.00e+00	1197.00
IUUC-Ome-081779	Oryza meridionalis	68.36	0.00e+00	1269.00
IUUC-Oni-082366	Oryza nivara	68.36	0.00e+00	1269.00
IUUC-Opu-083958	Oryza punctata	73.70	0.00e+00	1272.00
IUUC-Oru-084182	Oryza rufipogon	68.36	0.00e+00	1269.00
IUUC-Osa-085285	Oryza sativa	68.17	0.00e+00	1269.00
IUUC-Ola-086954	Oryzias latipes	89.69	0.00e+00	1995.00
IUUC-Olu-087685	Ostreococcus lucimarinus	57.59	0.00e+00	952.00
IUUC-Oga-088591	Otolemur garnettii	97.14	0.00e+00	2117.00
IUUC-Oar-089417	Ovis aries	95.12	0.00e+00	1970.00
IUUC-Ptr-091510	Pan troglodytes	96.54	0.00e+00	1855.00
IUUC-Pan-091886	Papio anubis	97.05	0.00e+00	2115.00
IUUC-Psi-093755	Pelodiscus sinensis	98.95	0.00e+00	1442.00
IUUC-Pma-094470	Petromyzon marinus	86.38	0.00e+00	1903.00
IUUC-Pno-094963	Phaeosphaeria nodorum	66.79	0.00e+00	1164.00
IUUC-Ppa-095479	Physcomitrella patens	72.52	0.00e+00	1299.00
IUUC-Pfo-097456	Poecilia formosa	92.22	0.00e+00	2032.00
IUUC-Pab-098075	Pongo abelii	89.73	0.00e+00	1920.00
IUUC-Pop-099557	Populus trichocarpa	63.39	0.00e+00	1288.00
IUUC-Pca-100717	Procavia capensis	100.00	3.00e-176	612.00
IUUC-Ppe-101675	Prunus persica	61.88	0.00e+00	1303.00
IUUC-Pva-103029	Pteropus vampyrus	96.29	0.00e+00	1384.00
IUUC-Pgr-103318	Puccinia graminis	64.19	0.00e+00	1211.00
IUUC-Ptt-103956	Puccinia triticina	64.04	0.00e+00	1211.00
IUUC-Pte-104399	Pyrenophora teres	62.25	0.00e+00	1176.00
IUUC-Pyt-104749	Pyrenophora triticirepentis	62.03	0.00e+00	1172.00
IUUC-Rno-105784	Rattus norvegicus	96.42	0.00e+00	2142.00
IUUC-Sce-106206	Saccharomyces cerevisiae	55.78	0.00e+00	941.00
IUUC-Sha-106566	Sarcophilus harrisii	98.39	0.00e+00	2034.00
IUUC-Sja-107721	Schizosaccharomyces japonicus	62.28	0.00e+00	1099.00
IUUC-Spo-108258	Schizosaccharomyces pombe	59.35	0.00e+00	1051.00
IUUC-Ssl-108640	Sclerotinia sclerotiorum	64.31	0.00e+00	1045.00
IUUC-Sit-109760	Setaria italica	63.65	0.00e+00	1269.00
IUUC-Sly-111807	Solanum lycopersicum	73.16	0.00e+00	1302.00
IUUC-Stu-112869	Solanum tuberosum	67.58	0.00e+00	1296.00
IUUC-Sar-112950	Sorex araneus	38.31	2.00e-43	170.00
IUUC-Sbi-114863	Sorghum bicolor	63.88	0.00e+00	1267.00
IUUC-Sre-115092	Sporisorium reilianum	65.71	0.00e+00	1265.00
IUUC-Tgu-117214	Taeniopygia guttata	91.70	0.00e+00	1673.00
IUUC-Tru-118386	Takifugu rubripes	88.48	0.00e+00	2019.00
IUUC-Tsy-119550	Tarsius syrichta	99.65	7.00e-168	584.00
IUUC-Tni-120212	Tetraodon nigroviridis	89.66	0.00e+00	1927.00
IUUC-Tca-121353	Theobroma cacao	71.83	0.00e+00	1291.00
IUUC-Tre-122245	Trichoderma reesei	34.94	7.00e-53	203.00
IUUC-Tvi-122452	Trichoderma virens	64.42	0.00e+00	1113.00
IUUC-Tae-123692	Triticum aestivum	73.20	0.00e+00	1262.00
IUUC-Tur-126770	Triticum urartu	61.32	0.00e+00	1077.00
IUUC-Tme-126956	Tuber melanosporum	69.27	0.00e+00	1200.00
IUUC-Tbe-127873	Tupaia belangeri	33.89	2.00e-50	193.00
IUUC-Ttr-128212	Tursiops truncatus	93.46	0.00e+00	2001.00
IUUC-Uma-129327	Ustilago maydis	66.36	0.00e+00	1253.00
IUUC-Vda-129858	Verticillium dahliae	65.66	0.00e+00	1135.00
IUUC-Vpa-130743	Vicugna pacos	33.89	3.00e-51	196.00
IUUC-Vvi-131222	Vitis vinifera	72.53	0.00e+00	1274.00
IUUC-Xtr-131800	Xenopus tropicalis	82.56	0.00e+00	1751.00
IUUC-Xma-133216	Xiphophorus maculatus	92.04	0.00e+00	2027.00
IUUC-Yli-134482	Yarrowia lipolytica	54.14	0.00e+00	897.00
IUUC-Zma-134802	Zea mays	72.42	0.00e+00	1273.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence