iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh2_kg.7__1819__AT4G24560.1	fgenesh2_kg.7__1819__AT4G24560.1	fgenesh2_kg.7__1819__AT4G24560.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	6.80e-73	246.4	540	844

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 1    tGlkNlgNtCYmNSvLQcLsnipelrelllekkkeklneenpkepkgellkslqklfeelwkskkkavsprellkal 77
           +Gl N+gN+C+ N v QcL+++p+l+ ++l+    +l+ ++ +++++++++ ++kl+ +  k+ k+  sp+ ll++l
   Q: 540  CGLINVGNSCFANVVFQCLMFTPPLTTYFLQ----QLHSRACTKKEQCFTCGFEKLVLKA-KEGKSPLSPNGLLSQL 611
           7******************************....555555578899**********988.99999*********** PP
   S: 78   kkeaeefsgyeqqDaqEflaflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqi 154
           +++   + + +++Da+Efl+f++d++++ + k               +++ + +++ k + ++li  +F+g l+s+i
   Q: 612  QNIGIFLGNGKEEDAHEFLRFVVDTMQSVCIK---------------ASEYDMPKSSKLEDTTLIGLTFGGYLRSKI 673
           ****99999*********************22...............223335788899999*************** PP
   S: 155  kclecdnvssreepfldlslpvpgkeetkkeslqdcLesftkeeelegenkyycekckkkqeaekklklkklPevLi 231
           kc +c+ +s+ +e+++dl++++ g+ +    +l+d+L+ ft++e l+g+nky c +ck++ +a+kklk++  P+vL+
   Q: 674  KCMKCQVKSELREKMMDLTVEIDGDIS----TLDDALRRFTRTEILDGDNKYRCGSCKSYERAKKKLKITDPPNVLT 746
           **************************6....7********************************************* PP
   S: 232  lhLkRfsfseeqksrekinkkvefpleLdlspfctspeekqkekkkYeLiavvvHsG...slssGHYvayvknekgk 305
           + LkRf+     ++  k+nk + fp++Ldl+p+++  +ek   ++ Y+L++v+vH      + sGHYv+y++n ++k
   Q: 747  IALKRFQA----GKFGKLNKLIRFPETLDLAPYVSGGSEK---SHDYKLYGVIVHLDimnAAFSGHYVCYIRN-QNK 815
           ******33....4457*******************95544...8***********873325569*********.889 PP
   S: 306  WllfdDskVtevkeeevleetgstaYvlfYkr 337
           W++ dDs+V +++ e++ +   + aY+lfY r
   Q: 816  WYKADDSTVVTSDVERIMT---KGAYMLFYAR 844
           *******************...********87 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MLLVLDLGIS TLVLVISLVL PLIGLFVRHK WRVAAQRREE IRRLLIHASQ EAARAELEAS 60
VEFSSVAISN IFHCPVCYCI ATTRCSRCKS VRYCSGKCQI IHWRQGHKDE CRPASIVYDS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAAGCAAAG CGTCTTGGTT TAGAAAAGTA ATATCCTCCT CTCCTATTTT CTTCCTCCTT 60
GTACCGAAGA ATCTCTCCAC TCTTGCCCTC TTTCGAAACC CTAAACCAGA AGCAGCACCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0378--Hydrolase
KW-0472--Membrane
KW-0645--Protease
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001394--Peptidase_C19_UCH
IPR018200--USP_CS
IPR028889--USP_dom
IPR002893--Znf_MYND

PROSITE

PS00972--USP_1
PS50235--USP_3
PS50865--ZF_MYND_2

Pfam

PF00443--UCH
PF01753--zf-MYND

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0046872--F:metal ion binding
GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0008283--P:cell proliferation
GO:0009908--P:flower development
GO:0048366--P:leaf development
GO:0016579--P:protein deubiquitination
GO:1901000--P:regulation of response to salt stress
GO:0009651--P:response to salt stress
GO:0048364--P:root development
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

aly:ARALYDRAFT_492386

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000401	Aegilops tauschii	59.12	7.00e-126	444.00
IUUC-Atr-002920	Amborella trichopoda	58.27	2.00e-135	476.00
IUUC-Ath-006972	Arabidopsis thaliana	91.19	0.00e+00	1536.00
IUUC-Bol-015264	Brassica oleracea	76.41	0.00e+00	1282.00
IUUC-Bra-018079	Brassica rapa	76.20	0.00e+00	1271.00
IUUC-Gma-044069	Glycine max	41.40	3.00e-170	592.00
IUUC-Mtr-058629	Medicago truncatula	42.78	2.00e-152	532.00
IUUC-Mac-065141	Musa acuminata	59.43	1.00e-133	470.00
IUUC-Pop-099860	Populus trichocarpa	44.57	0.00e+00	647.00
IUUC-Ppe-101801	Prunus persica	44.94	0.00e+00	648.00
IUUC-Sly-111806	Solanum lycopersicum	65.33	2.00e-143	502.00
IUUC-Tca-121756	Theobroma cacao	46.14	0.00e+00	668.00
IUUC-Tae-125220	Triticum aestivum	59.39	3.00e-126	446.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence