iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G06190	AT3G06190.5	AT3G06190.5
AT3G06190	AT3G06190.3	AT3G06190.3
AT3G06190	AT3G06190.1	AT3G06190.1
AT3G06190	AT3G06190.4	AT3G06190.4
AT3G06190	AT3G06190.2	AT3G06190.2

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 adaptor/Cullin RING/BCR/BTB_Other	BTB_Other	15772280

Classification

Family	E-value	Score	Start	End
E3 adaptor/Cullin RING/BCR/BTB_Other: BTB	9.30e-18	65.3	202	265

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/BCR/BTB_Other: BTB

   S: 1    aDvilvvggeeffahkivLaasSsvFyalflmeleesksklmveikdvqpevfrallkFlYtgkl 65
           aDv+++v+ge f+ahk+vLaa+S vF+a + + l++ + ++++ i+dvq+  f+ ll+F+Y +++
   Q: 202  ADVTFEVDGETFPAHKLVLAARSAVFRAQLFGPLRSEN-TNCIIIEDVQAPIFKMLLHFIYWDEM 265
           7**********************************887.**********************9986 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Interacts with RAP2-4. Interacts with CUL3A. Binds to MYB56 at the promoter of FLOWERING LOCUS T (FT) (PubMed:25343985).

Protein Sequence
(Fasta)

MDTIRVSKEV PGSSKSTAQS LTESTSRTET INGSHEFKIS GYSLVKGMGI GKYVASDTFM 60
VGGYSWAIYF YPDGKSPEDN SVYVSLFIAL ASEGADVRAL FELTLVDQSG NERHKVHSHF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCGCAACCTA CCAAACTGTT GTGTTTAAAA CTTAAACCGA TCTATCAAGC AAGTGGTTCC 60
TCTCTCTCTC TACCTCTCGT TTTTGGCCAA CGTCGTCGTC TTCACGATCC ACGACGATTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0833--Ubl conjugation pathway

Interpro

IPR034090--BPM_C
IPR000210--BTB/POZ_dom
IPR002083--MATH/TRAF_dom
IPR011333--SKP1/BTB/POZ
IPR008974--TRAF-like

PROSITE

PS50097--BTB
PS50144--MATH

Pfam

PF00651--BTB

SMART

SM00225--BTB
SM00061--MATH

Gene Ontology

GO:0005634--C:nucleus
GO:0071472--P:cellular response to salt stress
GO:0042631--P:cellular response to water deprivation
GO:0016567--P:protein ubiquitination
GO:0006970--P:response to osmotic stress

KEGG

ath:AT3G06190

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002922	Amborella trichopoda	74.73	6.00e-174	602.00
IUUC-Aly-006387	Arabidopsis lyrata	97.29	0.00e+00	726.00
IUUC-Ago-007716	Ashbya gossypii	30.00	1.00e-01	30.00
IUUC-Bdi-014230	Brachypodium distachyon	70.82	4.00e-161	560.00
IUUC-Bol-015862	Brassica oleracea	90.64	0.00e+00	705.00
IUUC-Bra-016665	Brassica rapa	89.66	0.00e+00	702.00
IUUC-Dse-031351	Dothistroma septosporum	29.41	2.00e-04	38.50
IUUC-Gma-044373	Glycine max	72.03	3.00e-180	623.00
IUUC-Lpe-051159	Leersia perrieri	74.05	3.00e-154	540.00
IUUC-Lma-053039	Leptosphaeria maculans	25.74	6.00e-06	44.70
IUUC-Mor-057055	Magnaporthe oryzae	29.52	1.00e-07	50.10
IUUC-Mtr-058012	Medicago truncatula	75.60	2.00e-178	617.00
IUUC-Mac-065018	Musa acuminata	70.99	3.00e-162	564.00
IUUC-Oba-075938	Oryza barthii	69.97	9.00e-157	546.00
IUUC-Obr-076250	Oryza brachyantha	70.92	8.00e-155	539.00
IUUC-Ogl-077123	Oryza glaberrima	70.90	5.00e-160	556.00
IUUC-Oin-079577	Oryza indica	70.90	1.00e-159	555.00
IUUC-Olo-080831	Oryza longistaminata	73.02	4.00e-148	518.00
IUUC-Ome-081977	Oryza meridionalis	73.20	1.00e-152	532.00
IUUC-Oni-082561	Oryza nivara	70.90	1.00e-159	555.00
IUUC-Opu-083169	Oryza punctata	70.87	1.00e-160	558.00
IUUC-Oru-084762	Oryza rufipogon	70.63	2.00e-157	547.00
IUUC-Osa-086036	Oryza sativa	70.90	5.00e-160	556.00
IUUC-Olu-087691	Ostreococcus lucimarinus	39.13	2.00e-63	234.00
IUUC-Ppa-096004	Physcomitrella patens	63.50	6.00e-140	489.00
IUUC-Pop-099010	Populus trichocarpa	73.28	2.00e-167	580.00
IUUC-Ppe-101264	Prunus persica	73.87	7.00e-174	602.00
IUUC-Sit-110092	Setaria italica	71.62	4.00e-161	560.00
IUUC-Sly-111418	Solanum lycopersicum	73.80	2.00e-172	597.00
IUUC-Stu-112692	Solanum tuberosum	73.26	7.00e-172	595.00
IUUC-Sbi-113898	Sorghum bicolor	70.11	4.00e-159	553.00
IUUC-Tca-120926	Theobroma cacao	73.90	0.00e+00	627.00
IUUC-Tre-122160	Trichoderma reesei	31.25	2.00e-05	42.40
IUUC-Tvi-122498	Trichoderma virens	29.91	8.00e-07	46.60
IUUC-Tae-124321	Triticum aestivum	70.05	5.00e-161	559.00
IUUC-Tur-126156	Triticum urartu	70.05	5.00e-161	559.00
IUUC-Vvi-131357	Vitis vinifera	76.39	1.00e-180	625.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence