iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pyt-104718

Ensembl Protein ID

EDU42371

UniProt Accession

B2WH61; B2WH61_PYRTR

Genbank Protein ID

EDU42371.1

Protein Name

Polyadenylation factor subunit 2

Genbank Nucleotide ID

DS231625

Gene Name

PTRG_09320

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PTRG_09320	EDU42371	EDU42371

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.40e-33	110.2	170	202
UBD/Beta-Prp	7.40e-48	162.5	42	280

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 6    vtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           v ++++ +  +llvsGs D+++k WD+rtg++l
   Q: 170  VKSVDWhPHkGLLVSGSKDHQVKFWDPRTGRCL 202
           899****888*********************97 PP

UBD/Beta-Prp

   S: 10   ksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklv 110
           k++i++vk++p+++ l+tgs++g  ++w+    ++   ++ hea+++av++ +++++l+++ + +++k w   ++  v  +++h++ v+ ls+ p++ k+v
   Q: 42   KHPINVVKWTPEGRRLLTGSTSGEFTLWNGMGFNFETIMQAHEAAIRAVEYTSTDDWLLSADQTGVVKYWQT-NFNNVKEIQAHTEAVRGLSIAPTDTKFV 141
           678999999999999999999999999999999998888999999999999999999999999999999976.5777888999999999999999999999 PP
   S: 111  sGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsng.kelvsgsldgtvklwdlq 210
           +  +d t+++wd  + ++   tl+gh   v +v +hp + llvsGs+D +v++Wd +tg++l+tl g h++++ ++ f++ + + l+++++d t +++dl+
   Q: 142  TCADDTTLKIWDFASSTEEL-TLTGHGWEVKSVDWHPHKGLLVSGSKDHQVKFWDPRTGRCLTTLHG-HKNPISKTMFEPVQgNMLATCARDHTARIFDLR 240
           99999999999999999999.9999999999999999999999999999999999999999999998.999999999999776999999999999999999 PP
   S: 211  tgecvrtlnghtdnvksvrfs.pnderlvsgssDgsiriW 249
             + v  l+gh++ +  ++ +  ++++l +g+ Dgsi  +
   Q: 241  MMRDVLLLKGHEKDIITMAWHpMHKNLLSTGGVDGSIHHY 280
           8888999999999999999994455555556699999876 PP

Organism

Pyrenophora triticirepentis

Protein Sequence
(Fasta)

MPEMERPSAS YIVDMQPPAA RVASAAESIP AKAVHSSLNK VKHPINVVKW TPEGRRLLTG 60
STSGEFTLWN GMGFNFETIM QAHEAAIRAV EYTSTDDWLL SADQTGVVKY WQTNFNNVKE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCCGGAGA TGGAGCGACC AAGCGCAAGC TATATTGTCG ACATGCAACC CCCAGCAGCG 60
CGGGTCGCGA GTGCTGCAGA GTCGATACCA GCCAAAGCCG TACATTCTTC CCTTAACAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR027295--Quinoprotein_ADH-like_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0005847--C:mRNA cleavage and polyadenylation specificity factor complex
GO:0000790--C:nuclear chromatin
GO:0031124--P:mRNA 3'-end processing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001064	Aegilops tauschii	43.41	2.00e-89	322.00
IUUC-Aml-001363	Ailuropoda melanoleuca	47.80	1.00e-102	366.00
IUUC-Atr-003030	Amborella trichopoda	45.76	1.00e-93	335.00
IUUC-Apl-003409	Anas platyrhynchos	47.54	6.00e-101	360.00
IUUC-Aca-004694	Anolis carolinensis	47.80	2.00e-102	365.00
IUUC-Aly-006063	Arabidopsis lyrata	45.14	6.00e-97	346.00
IUUC-Ath-006583	Arabidopsis thaliana	44.47	6.00e-96	343.00
IUUC-Ago-007805	Ashbya gossypii	44.44	8.00e-93	332.00
IUUC-Acl-008075	Aspergillus clavatus	60.73	5.00e-153	532.00
IUUC-Afl-008582	Aspergillus flavus	60.00	3.00e-150	523.00
IUUC-Afu-008817	Aspergillus fumigatus	60.97	5.00e-139	485.00
IUUC-Ani-009391	Aspergillus nidulans	59.04	4.00e-143	499.00
IUUC-Ang-009750	Aspergillus niger	60.71	6.00e-103	365.00
IUUC-Aor-010085	Aspergillus oryzae	60.23	5.00e-151	526.00
IUUC-Ate-010397	Aspergillus terreus	59.63	3.00e-152	530.00
IUUC-Ame-010741	Astyanax mexicanus	56.93	5.00e-68	251.00
IUUC-Bgr-012169	Blumeria graminis	70.02	6.00e-159	552.00
IUUC-Bta-013265	Bos taurus	47.80	2.00e-102	365.00
IUUC-Bci-013762	Botrytis cinerea	70.75	6.00e-176	608.00
IUUC-Bdi-014849	Brachypodium distachyon	45.88	5.00e-99	353.00
IUUC-Bol-015325	Brassica oleracea	47.31	7.00e-101	359.00
IUUC-Bra-017187	Brassica rapa	47.59	6.00e-101	359.00
IUUC-Cel-018378	Caenorhabditis elegans	46.78	6.00e-97	346.00
IUUC-Cja-019547	Callithrix jacchus	47.80	1.00e-102	366.00
IUUC-Cfa-020031	Canis familiaris	47.80	2.00e-102	365.00
IUUC-Cpo-021554	Cavia porcellus	47.80	3.00e-102	364.00
IUUC-Cre-022830	Chlamydomonas reinhardtii	35.29	2.00e-55	208.00
IUUC-Csa-023146	Chlorocebus sabaeus	47.53	4.00e-102	364.00
IUUC-Cho-024679	Choloepus hoffmanni	46.74	2.00e-95	342.00
IUUC-Cin-025415	Ciona intestinalis	45.05	1.00e-93	335.00
IUUC-Csv-026003	Ciona savignyi	45.33	4.00e-94	336.00
IUUC-Cgl-026391	Colletotrichum gloeosporioides	70.37	2.00e-166	577.00
IUUC-Cne-026983	Cryptococcus neoformans	41.98	3.00e-85	307.00
IUUC-Cme-027147	Cyanidioschyzon merolae	45.33	1.00e-95	341.00
IUUC-Dre-028545	Danio rerio	46.70	4.00e-101	361.00
IUUC-Dno-029677	Dasypus novemcinctus	47.80	8.00e-103	367.00
IUUC-Dse-031371	Dothistroma septosporum	63.35	2.00e-148	517.00
IUUC-Dme-031663	Drosophila melanogaster	44.99	3.00e-96	344.00
IUUC-Ete-032511	Echinops telfairi	39.56	8.00e-78	284.00
IUUC-Eca-034152	Equus caballus	47.80	2.00e-102	365.00
IUUC-Eeu-034560	Erinaceus europaeus	37.97	5.00e-29	121.00
IUUC-Fca-035820	Felis catus	47.80	2.00e-102	366.00
IUUC-Fox-037958	Fusarium oxysporum	68.64	3.00e-167	579.00
IUUC-Fso-038162	Fusarium solani	68.89	7.00e-167	578.00
IUUC-Gmo-039708	Gadus morhua	47.01	1.00e-100	359.00
IUUC-Ggr-040031	Gaeumannomyces graminis	66.22	1.00e-152	531.00
IUUC-Gga-040963	Gallus gallus	47.80	2.00e-102	365.00
IUUC-Gac-041541	Gasterosteus aculeatus	46.07	3.00e-98	351.00
IUUC-Gma-044352	Glycine max	46.34	2.00e-99	355.00
IUUC-Ggo-045564	Gorilla gorilla	47.80	2.00e-102	365.00
IUUC-Hsa-045833	Homo sapiens	47.80	1.00e-102	366.00
IUUC-Hvu-047848	Hordeum vulgare	43.64	1.00e-74	271.00
IUUC-Itr-048083	Ictidomys tridecemlineatus	47.80	2.00e-102	365.00
IUUC-Kpa-049308	Komagataella pastoris	49.73	4.00e-108	382.00
IUUC-Lch-050525	Latimeria chalumnae	47.80	6.00e-102	363.00
IUUC-Lpe-051364	Leersia perrieri	40.11	2.00e-81	295.00
IUUC-Loc-052696	Lepisosteus oculatus	47.25	9.00e-102	363.00
IUUC-Lma-052951	Leptosphaeria maculans	90.82	0.00e+00	807.00
IUUC-Laf-053653	Loxodonta africana	47.80	3.00e-102	365.00
IUUC-Mcc-055797	Macaca mulatta	47.80	2.00e-102	366.00
IUUC-Meu-056331	Macropus eugenii	53.41	2.00e-85	309.00
IUUC-Mor-057168	Magnaporthe oryzae	67.00	6.00e-161	559.00
IUUC-Mpo-057510	Magnaporthe poae	66.09	4.00e-94	336.00
IUUC-Mtr-058032	Medicago truncatula	45.80	8.00e-99	353.00
IUUC-Mla-058852	Melampsora laricipopulina	45.90	7.00e-106	375.00
IUUC-Mga-059311	Meleagris gallopavo	47.80	2.00e-102	365.00
IUUC-Mvi-060544	Microbotryum violaceum	47.57	7.00e-107	379.00
IUUC-Mmr-061143	Microcebus murinus	47.80	2.00e-102	365.00
IUUC-Mdo-061977	Monodelphis domestica	47.80	2.00e-102	365.00
IUUC-Mmu-063922	Mus musculus	47.80	2.00e-102	365.00
IUUC-Mac-064961	Musa acuminata	46.15	4.00e-99	353.00
IUUC-Mpu-066079	Mustela putorius furo	49.12	5.00e-99	354.00
IUUC-Mlu-067247	Myotis lucifugus	47.80	1.00e-102	366.00
IUUC-Nfi-068255	Neosartorya fischeri	60.00	3.00e-146	510.00
IUUC-Ncr-068909	Neurospora crassa	68.97	1.00e-168	584.00
IUUC-Nle-068994	Nomascus leucogenys	47.80	1.00e-102	366.00
IUUC-Opr-071079	Ochotona princeps	47.80	1.00e-102	366.00
IUUC-Ont-071971	Oreochromis niloticus	46.98	7.00e-101	360.00
IUUC-Oan-073135	Ornithorhynchus anatinus	48.08	8.00e-103	367.00
IUUC-Ocu-073982	Oryctolagus cuniculus	47.80	2.00e-102	365.00
IUUC-Oba-075297	Oryza barthii	40.66	8.00e-84	303.00
IUUC-Obr-076641	Oryza brachyantha	45.33	3.00e-98	350.00
IUUC-Ogl-077539	Oryza glaberrima	42.96	2.00e-74	271.00
IUUC-Ogu-078807	Oryza glumaepatula	40.66	8.00e-84	303.00
IUUC-Oin-079229	Oryza indica	45.33	2.00e-98	351.00
IUUC-Olo-080371	Oryza longistaminata	40.66	9.00e-84	302.00
IUUC-Ome-081149	Oryza meridionalis	40.38	6.00e-83	300.00
IUUC-Oni-082970	Oryza nivara	40.66	8.00e-84	303.00
IUUC-Opu-083415	Oryza punctata	40.38	2.00e-81	295.00
IUUC-Oru-085236	Oryza rufipogon	40.66	9.00e-84	303.00
IUUC-Ola-087421	Oryzias latipes	47.25	1.00e-100	358.00
IUUC-Olu-087821	Ostreococcus lucimarinus	43.87	4.00e-88	316.00
IUUC-Oga-088132	Otolemur garnettii	47.80	2.00e-102	365.00
IUUC-Oar-089513	Ovis aries	47.80	2.00e-102	365.00
IUUC-Ptr-090717	Pan troglodytes	47.80	1.00e-102	366.00
IUUC-Pan-092108	Papio anubis	47.80	2.00e-102	366.00
IUUC-Psi-093892	Pelodiscus sinensis	47.80	3.00e-102	365.00
IUUC-Pma-094561	Petromyzon marinus	47.53	6.00e-101	360.00
IUUC-Pno-094943	Phaeosphaeria nodorum	85.82	0.00e+00	718.00
IUUC-Ppa-095359	Physcomitrella patens	48.25	2.00e-103	368.00
IUUC-Pfo-096516	Poecilia formosa	47.40	6.00e-100	357.00
IUUC-Pab-097759	Pongo abelii	47.80	1.00e-102	366.00
IUUC-Pop-098892	Populus trichocarpa	47.06	3.00e-100	357.00
IUUC-Ppe-101957	Prunus persica	46.98	1.00e-100	358.00
IUUC-Pva-102918	Pteropus vampyrus	47.80	2.00e-102	365.00
IUUC-Pgr-103594	Puccinia graminis	46.11	1.00e-109	389.00
IUUC-Ptt-103879	Puccinia triticina	46.08	7.00e-98	349.00
IUUC-Pte-104419	Pyrenophora teres	99.18	0.00e+00	839.00
IUUC-Rno-105838	Rattus norvegicus	47.80	1.00e-102	366.00
IUUC-Sce-106331	Saccharomyces cerevisiae	41.94	4.00e-91	326.00
IUUC-Sha-107435	Sarcophilus harrisii	47.80	2.00e-102	365.00
IUUC-Sja-107796	Schizosaccharomyces japonicus	52.30	9.00e-119	418.00
IUUC-Spo-108163	Schizosaccharomyces pombe	52.85	1.00e-120	424.00
IUUC-Smo-108972	Selaginella moellendorffii	46.98	8.00e-102	362.00
IUUC-Sit-109729	Setaria italica	44.80	2.00e-97	347.00
IUUC-Sly-111679	Solanum lycopersicum	45.05	4.00e-99	354.00
IUUC-Sar-113157	Sorex araneus	47.80	2.00e-102	365.00
IUUC-Sbi-114853	Sorghum bicolor	44.51	1.00e-96	345.00
IUUC-Sre-115085	Sporisorium reilianum	47.41	5.00e-97	347.00
IUUC-Ssc-116286	Sus scrofa	47.67	8.00e-101	360.00
IUUC-Tgu-117219	Taeniopygia guttata	47.80	2.00e-102	365.00
IUUC-Tru-117550	Takifugu rubripes	47.25	4.00e-101	360.00
IUUC-Tsy-119294	Tarsius syrichta	47.80	1.00e-102	366.00
IUUC-Tni-120561	Tetraodon nigroviridis	47.25	2.00e-101	362.00
IUUC-Tca-121347	Theobroma cacao	46.98	1.00e-100	358.00
IUUC-Tre-122018	Trichoderma reesei	68.62	2.00e-164	570.00
IUUC-Tvi-122413	Trichoderma virens	68.09	1.00e-162	565.00
IUUC-Tae-123904	Triticum aestivum	45.60	4.00e-98	350.00
IUUC-Tme-127077	Tuber melanosporum	63.89	1.00e-144	504.00
IUUC-Tbe-127744	Tupaia belangeri	36.17	2.00e-54	206.00
IUUC-Ttr-128777	Tursiops truncatus	39.56	2.00e-77	283.00
IUUC-Uma-129568	Ustilago maydis	44.20	7.00e-94	336.00
IUUC-Vda-129834	Verticillium dahliae	67.97	2.00e-164	570.00
IUUC-Vvi-131360	Vitis vinifera	46.28	3.00e-98	351.00
IUUC-Xtr-132630	Xenopus tropicalis	48.08	2.00e-103	369.00
IUUC-Xma-133665	Xiphophorus maculatus	47.53	1.00e-101	362.00
IUUC-Yli-134556	Yarrowia lipolytica	45.61	3.00e-100	357.00
IUUC-Zma-135787	Zea mays	45.33	1.00e-97	349.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence