iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UBQ/UBQ_Other	4.50e-09	36.9	78	140

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UBQ/UBQ_Other

   S: 11   s.eltlkvnpsdtVaeLKekiekklgippeqqrLiykGkiLeddktLadyglkdgstihllek 72
           +  ++l+++ ++t++eLK+ ++ ++g+ p qqrL++kGk+ ed+  L  +g+ d ++++lle+
   Q: 78   AhFHDLSIEATSTFGELKMVLSLLTGLEPKQQRLVFKGKEREDHEYLHMVGVGDKDKVLLLED 140
           55789999****************************************************987 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MMKFKTKRFG IRFGFGKRIN NKGTQQDQQQ KGVGNNNNNS SCSNCEIKWE LRPGGMLVQK 60
RQESIGEDLI SIRVSTFAHF HDLSIEATST FGELKMVLSL LTGLEPKQQR LVFKGKERED 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CATGCAAGTA TGTATGTGGT TTTTGTTCTT ATCTTAACCT CTGGTCTCTT ATATAAACCA 60
CCTAAATGTT TCCATGTTCT ATGTATCCCA AAGCTTGAGA GAAAACAGAA AAGAAAAAAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom

PROSITE

PS50053--UBIQUITIN_2

Pfam

PF00240--ubiquitin

KEGG

ath:AT5G14360

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003060	Amborella trichopoda	60.00	1.00e-32	131.00
IUUC-Aly-006310	Arabidopsis lyrata	93.21	2.00e-79	286.00
IUUC-Bdi-014241	Brachypodium distachyon	68.93	4.00e-37	146.00
IUUC-Bol-016423	Brassica oleracea	88.34	7.00e-76	275.00
IUUC-Bra-016901	Brassica rapa	88.34	3.00e-76	276.00
IUUC-Gma-043778	Glycine max	66.94	7.00e-43	165.00
IUUC-Hvu-047573	Hordeum vulgare	64.08	2.00e-35	141.00
IUUC-Lpe-050908	Leersia perrieri	68.93	1.00e-37	147.00
IUUC-Mtr-057937	Medicago truncatula	55.29	1.00e-45	174.00
IUUC-Mac-064437	Musa acuminata	59.02	7.00e-38	148.00
IUUC-Oba-075952	Oryza barthii	67.96	4.00e-37	146.00
IUUC-Obr-076576	Oryza brachyantha	67.96	5.00e-32	130.00
IUUC-Ogl-077451	Oryza glaberrima	68.00	2.00e-36	144.00
IUUC-Ogu-078699	Oryza glumaepatula	68.93	8.00e-38	148.00
IUUC-Oin-079806	Oryza indica	68.00	4.00e-36	142.00
IUUC-Olo-081071	Oryza longistaminata	68.93	5.00e-38	149.00
IUUC-Ome-081147	Oryza meridionalis	68.93	6.00e-38	149.00
IUUC-Oni-082567	Oryza nivara	68.93	1.00e-37	148.00
IUUC-Opu-083599	Oryza punctata	68.93	1.00e-38	151.00
IUUC-Oru-084855	Oryza rufipogon	68.93	1.00e-37	148.00
IUUC-Osa-086281	Oryza sativa	68.93	1.00e-37	148.00
IUUC-Pop-099115	Populus trichocarpa	70.73	5.00e-43	166.00
IUUC-Ppe-101302	Prunus persica	57.52	1.00e-42	164.00
IUUC-Sit-110365	Setaria italica	63.03	2.00e-38	150.00
IUUC-Sly-110967	Solanum lycopersicum	61.79	9.00e-39	151.00
IUUC-Stu-112608	Solanum tuberosum	68.27	4.00e-39	152.00
IUUC-Sbi-114652	Sorghum bicolor	60.50	1.00e-38	151.00
IUUC-Tca-121231	Theobroma cacao	68.29	2.00e-42	163.00
IUUC-Tae-122923	Triticum aestivum	68.93	5.00e-37	145.00
IUUC-Tur-126453	Triticum urartu	61.17	6.00e-34	135.00
IUUC-Vvi-130866	Vitis vinifera	56.97	5.00e-45	172.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence