iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-098853

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

SHORT LIFE family protein

Genbank Nucleotide ID

CM000340

Gene Name

POPTR_0004s16700g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0004s16700	POPTR_0004s16700.1	POPTR_0004s16700.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	2.00e-09	38.6	141	189

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 3    vClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCrs 53
           +C  C+ +++ ++ +v+Ce C++wfHpaC ++s+ee ++ ++ ++C++C+s
   Q: 141  YC-KCEMPYNPDDLMVQCEGCSDWFHPACIEMSAEEAKRLDH-FFCENCSS 189
           78.7*****************************888888887.******87 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MAKAKAPRRT LDSYTVKPIN KTVKPGDCVL MRPSDPSKPS YVAKIERIES DGRGPNVRVR 60
VRWYYRPEES IGGRRQFHGS KEVFLSDHYD TQSADTIEGK CMVHSFKNYT KLDAVGNDDF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TGTCTTTGTG CATGACCTTG TTTGTTAACA CGCTACTACT TCCATGGCTA AAGCTAAAGC 60
ACCAAGACGC ACTCTTGACT CTTACACTGT TAAACCCATC AACAAAACCG TTAAACGTAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001025--BAH_dom
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51038--BAH
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF01426--BAH
PF00628--PHD

SMART

SM00439--BAH
SM00249--PHD

Gene Ontology

GO:0000785--C:chromatin
GO:0005677--C:chromatin silencing complex
GO:0003682--F:chromatin binding
GO:0000976--F:transcription regulatory region sequence-specific DNA binding
GO:0008270--F:zinc ion binding
GO:0006342--P:chromatin silencing
GO:0031507--P:heterochromatin assembly

KEGG

pop:POPTR_0004s16700g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aca-005043	Anolis carolinensis	33.77	4.00e-11	63.50
IUUC-Aly-005443	Arabidopsis lyrata	71.83	8.00e-92	328.00
IUUC-Ath-006906	Arabidopsis thaliana	70.42	3.00e-90	323.00
IUUC-Ago-007912	Ashbya gossypii	46.67	2.20e-02	33.10
IUUC-Ani-009326	Aspergillus nidulans	35.00	3.00e-06	47.00
IUUC-Ang-009560	Aspergillus niger	35.19	9.00e-07	48.90
IUUC-Ame-011579	Astyanax mexicanus	40.00	7.00e-10	59.30
IUUC-Bdi-015071	Brachypodium distachyon	68.95	1.00e-89	321.00
IUUC-Bra-017900	Brassica rapa	71.03	4.00e-90	323.00
IUUC-Cre-022934	Chlamydomonas reinhardtii	47.65	3.00e-46	177.00
IUUC-Dre-028285	Danio rerio	42.00	2.00e-10	61.20
IUUC-Dse-031262	Dothistroma septosporum	35.71	5.00e-07	49.30
IUUC-Fal-037017	Ficedula albicollis	35.06	2.00e-11	64.70
IUUC-Gga-040290	Gallus gallus	35.06	1.00e-11	65.10
IUUC-Gma-043965	Glycine max	84.26	2.00e-112	397.00
IUUC-Hsa-046760	Homo sapiens	44.00	1.00e-10	62.40
IUUC-Hvu-047723	Hordeum vulgare	65.14	5.00e-80	289.00
IUUC-Kpa-049165	Komagataella pastoris	30.77	3.00e-07	49.30
IUUC-Lpe-051138	Leersia perrieri	68.69	5.00e-90	322.00
IUUC-Loc-051927	Lepisosteus oculatus	35.14	2.00e-11	65.10
IUUC-Mor-057044	Magnaporthe oryzae	36.36	4.00e-05	42.70
IUUC-Mtr-058621	Medicago truncatula	82.57	5.00e-109	385.00
IUUC-Mvi-060256	Microbotryum violaceum	30.61	1.00e-05	45.10
IUUC-Mmr-061132	Microcebus murinus	44.00	1.00e-10	62.00
IUUC-Mmu-063458	Mus musculus	44.00	8.00e-11	62.40
IUUC-Ont-071935	Oreochromis niloticus	40.00	1.00e-07	52.00
IUUC-Oba-075855	Oryza barthii	69.19	1.00e-89	321.00
IUUC-Oin-079179	Oryza indica	69.72	7.00e-92	328.00
IUUC-Ome-081714	Oryza meridionalis	69.48	5.00e-91	326.00
IUUC-Oni-082099	Oryza nivara	69.48	5.00e-91	326.00
IUUC-Osa-085620	Oryza sativa	69.72	7.00e-92	328.00
IUUC-Ola-087236	Oryzias latipes	40.00	5.00e-10	60.10
IUUC-Ptr-091328	Pan troglodytes	44.00	1.00e-10	62.00
IUUC-Pno-094853	Phaeosphaeria nodorum	38.89	1.00e-06	48.10
IUUC-Pfo-096227	Poecilia formosa	40.00	5.00e-10	59.70
IUUC-Ppe-101818	Prunus persica	86.11	1.00e-111	394.00
IUUC-Pte-104158	Pyrenophora teres	37.04	6.00e-06	45.80
IUUC-Pyt-104466	Pyrenophora triticirepentis	37.04	4.00e-06	45.80
IUUC-Sce-106421	Saccharomyces cerevisiae	38.00	6.00e-06	44.70
IUUC-Sja-107734	Schizosaccharomyces japonicus	32.08	1.00e-05	46.20
IUUC-Spo-108246	Schizosaccharomyces pombe	34.55	2.00e-06	48.50
IUUC-Ssl-108594	Sclerotinia sclerotiorum	29.91	2.00e-06	48.90
IUUC-Sit-110445	Setaria italica	70.64	4.00e-92	330.00
IUUC-Sly-110932	Solanum lycopersicum	81.94	2.00e-107	380.00
IUUC-Stu-112357	Solanum tuberosum	81.40	7.00e-106	375.00
IUUC-Sbi-113989	Sorghum bicolor	71.56	1.00e-93	334.00
IUUC-Tgu-117091	Taeniopygia guttata	36.00	2.00e-11	65.10
IUUC-Tru-118118	Takifugu rubripes	33.78	1.00e-10	62.00
IUUC-Tni-120632	Tetraodon nigroviridis	33.77	8.00e-11	62.40
IUUC-Tca-121689	Theobroma cacao	89.95	5.00e-113	399.00
IUUC-Tre-122185	Trichoderma reesei	41.51	1.00e-05	43.50
IUUC-Tae-123050	Triticum aestivum	68.35	4.00e-90	323.00
IUUC-Ttr-128194	Tursiops truncatus	44.00	9.00e-11	62.40
IUUC-Uma-129425	Ustilago maydis	37.50	2.00e-06	48.10
IUUC-Vvi-131074	Vitis vinifera	86.11	2.00e-112	397.00
IUUC-Xma-134037	Xiphophorus maculatus	40.00	5.00e-10	59.70

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence