iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007556

Ensembl Protein ID

AT1G05055.1

UniProt Accession

Q9ZVN9; TF2H2_ARATH

Genbank Protein ID

AAM90909.1; AAC97995.1; AEE27784.1; BAF01337.1

Protein Name

General transcription factor IIH subunit 2; TFIIH basal transcription factor complex p44 subunit

Genbank Nucleotide ID

AF499443; AC005322; CP002684; AK229479

Gene Name

GTF2H2; P44; At1g05055; T7A14.8

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G05055	AT1G05055.1	AT1G05055.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	41.75	1.00e-79	291.00	IUUC-Sce-106434

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Arabidopsis thaliana

Functional Description
(View)

Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for transcription, and is involved in nucleotide excision repair (NER) of damaged DNA. Can restore UV resistance in the NER-deficient ssl1-1 yeast mutant.

Protein Sequence
(Fasta)

MSNQRKRSND EREEEDDEDA EGIGEWERAY VDDRSWEELQ EDESGLLRPI DNSAIYHAQY 60
RRRLRMLSAA AAGTRIQKGL IRYLYIVIDF SRAAAEMDFR PSRMAIMAKH VEAFIREFFD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTTCTCTTCT TCTTTTTGTA ATTAGGTCTC TTAGACGGTG AGGTTAACGA TGAGTAATCA 60
AAGAAAGAGA TCAAACGATG AAAGAGAAGA AGAGGACGAC GAAGATGCGG AAGGTATCGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR007198--Ssl1-like
IPR004595--TFIIH_C1-like_dom
IPR012170--TFIIH_SSL1/p44
IPR002035--VWF_A
IPR001841--Znf_RING

PROSITE

PS50234--VWFA
PS50089--ZF_RING_2

Pfam

PF07975--C1_4
PF04056--Ssl1

SMART

SM01047--C1_4
SM00327--VWA

Gene Ontology

GO:0000439--C:core TFIIH complex
GO:0005675--C:holo TFIIH complex
GO:0003676--F:nucleic acid binding
GO:0008270--F:zinc ion binding
GO:0006289--P:nucleotide-excision repair
GO:0006357--P:regulation of transcription from RNA polymerase II promoter
GO:0006351--P:transcription, DNA-templated

KEGG

ath:AT1G05055

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000536	Aegilops tauschii	69.44	1.00e-112	398.00
IUUC-Aml-002041	Ailuropoda melanoleuca	42.01	5.00e-78	283.00
IUUC-Atr-003056	Amborella trichopoda	70.48	6.00e-135	473.00
IUUC-Apl-003464	Anas platyrhynchos	41.94	4.00e-71	261.00
IUUC-Aca-004745	Anolis carolinensis	42.51	3.00e-76	278.00
IUUC-Aly-005559	Arabidopsis lyrata	99.29	0.00e+00	765.00
IUUC-Ago-007851	Ashbya gossypii	41.16	2.00e-80	292.00
IUUC-Acl-008100	Aspergillus clavatus	36.92	4.00e-76	278.00
IUUC-Afl-008649	Aspergillus flavus	39.68	3.00e-11	58.50
IUUC-Afu-009066	Aspergillus fumigatus	36.21	1.00e-79	289.00
IUUC-Ani-009372	Aspergillus nidulans	35.94	2.00e-74	272.00
IUUC-Ang-009726	Aspergillus niger	36.92	5.00e-80	290.00
IUUC-Aor-010135	Aspergillus oryzae	36.71	3.00e-77	281.00
IUUC-Ate-010399	Aspergillus terreus	34.52	7.00e-21	92.80
IUUC-Ame-011618	Astyanax mexicanus	42.07	9.00e-87	313.00
IUUC-Bgr-012154	Blumeria graminis	37.35	3.00e-75	275.00
IUUC-Bta-012353	Bos taurus	41.75	2.00e-81	295.00
IUUC-Bci-013932	Botrytis cinerea	38.15	3.00e-79	288.00
IUUC-Bdi-014391	Brachypodium distachyon	74.29	2.00e-154	537.00
IUUC-Bol-015128	Brassica oleracea	92.18	0.00e+00	739.00
IUUC-Bra-017932	Brassica rapa	92.65	0.00e+00	742.00
IUUC-Cel-018649	Caenorhabditis elegans	38.76	1.00e-67	249.00
IUUC-Cja-018776	Callithrix jacchus	42.00	3.00e-78	284.00
IUUC-Cfa-020584	Canis familiaris	42.50	4.00e-79	287.00
IUUC-Cpo-021300	Cavia porcellus	42.00	5.00e-78	283.00
IUUC-Cre-022657	Chlamydomonas reinhardtii	47.69	3.00e-91	327.00
IUUC-Csa-024092	Chlorocebus sabaeus	42.25	2.00e-78	285.00
IUUC-Cho-024919	Choloepus hoffmanni	41.71	3.00e-37	147.00
IUUC-Cin-025386	Ciona intestinalis	39.95	5.00e-82	297.00
IUUC-Csv-026295	Ciona savignyi	39.55	6.00e-78	283.00
IUUC-Cgl-026612	Colletotrichum gloeosporioides	37.35	1.00e-70	259.00
IUUC-Cne-026956	Cryptococcus neoformans	36.97	1.00e-76	279.00
IUUC-Cme-027150	Cyanidioschyzon merolae	32.50	9.00e-50	190.00
IUUC-Dre-027962	Danio rerio	42.61	2.00e-89	322.00
IUUC-Dno-029979	Dasypus novemcinctus	43.87	1.00e-68	252.00
IUUC-Dse-031405	Dothistroma septosporum	41.49	5.00e-79	287.00
IUUC-Dme-031710	Drosophila melanogaster	38.81	1.00e-82	299.00
IUUC-Ete-032631	Echinops telfairi	38.77	3.00e-71	261.00
IUUC-Eca-034054	Equus caballus	42.72	4.00e-79	287.00
IUUC-Fca-035724	Felis catus	40.00	5.00e-74	270.00
IUUC-Fal-036987	Ficedula albicollis	41.73	1.00e-85	309.00
IUUC-Fox-037692	Fusarium oxysporum	39.90	1.00e-82	300.00
IUUC-Fso-038442	Fusarium solani	41.45	7.00e-84	303.00
IUUC-Gmo-039273	Gadus morhua	43.04	2.00e-87	315.00
IUUC-Ggr-040009	Gaeumannomyces graminis	40.50	2.00e-64	239.00
IUUC-Gga-041089	Gallus gallus	42.03	4.00e-86	310.00
IUUC-Gac-041978	Gasterosteus aculeatus	41.44	5.00e-82	297.00
IUUC-Gma-043371	Glycine max	75.77	7.00e-178	615.00
IUUC-Hsa-046001	Homo sapiens	42.25	5.00e-78	283.00
IUUC-Itr-048355	Ictidomys tridecemlineatus	42.50	3.00e-85	308.00
IUUC-Kpa-049235	Komagataella pastoris	40.05	3.00e-78	285.00
IUUC-Lch-049926	Latimeria chalumnae	42.53	7.00e-83	300.00
IUUC-Lpe-051352	Leersia perrieri	75.06	5.00e-149	520.00
IUUC-Loc-051987	Lepisosteus oculatus	40.91	4.00e-85	307.00
IUUC-Lma-053171	Leptosphaeria maculans	32.96	1.00e-65	243.00
IUUC-Laf-054372	Loxodonta africana	41.73	4.00e-82	297.00
IUUC-Mcc-055108	Macaca mulatta	42.25	3.00e-78	284.00
IUUC-Mor-056990	Magnaporthe oryzae	38.37	5.00e-79	287.00
IUUC-Mtr-058401	Medicago truncatula	75.69	8.00e-179	619.00
IUUC-Mla-059186	Melampsora laricipopulina	39.71	7.00e-86	310.00
IUUC-Mvi-060262	Microbotryum violaceum	40.54	2.00e-86	312.00
IUUC-Mmr-061688	Microcebus murinus	39.29	4.00e-69	254.00
IUUC-Mdo-062154	Monodelphis domestica	42.25	9.00e-83	299.00
IUUC-Mmu-064232	Mus musculus	41.54	1.00e-76	279.00
IUUC-Mac-065091	Musa acuminata	72.57	2.00e-162	565.00
IUUC-Mpu-066747	Mustela putorius furo	38.57	4.00e-64	238.00
IUUC-Mlu-067799	Myotis lucifugus	39.69	2.00e-66	245.00
IUUC-Nfi-068371	Neosartorya fischeri	38.10	2.00e-13	67.40
IUUC-Ncr-068704	Neurospora crassa	38.33	2.00e-78	285.00
IUUC-Nle-069054	Nomascus leucogenys	42.00	4.00e-77	281.00
IUUC-Ont-071624	Oreochromis niloticus	42.28	3.00e-85	307.00
IUUC-Oan-072898	Ornithorhynchus anatinus	41.28	7.00e-82	296.00
IUUC-Ocu-074289	Oryctolagus cuniculus	39.81	2.00e-60	225.00
IUUC-Oba-075985	Oryza barthii	73.64	2.00e-146	511.00
IUUC-Obr-076887	Oryza brachyantha	73.39	1.00e-152	532.00
IUUC-Ogl-077823	Oryza glaberrima	73.64	2.00e-146	511.00
IUUC-Ogu-078412	Oryza glumaepatula	75.83	1.00e-134	473.00
IUUC-Oin-079569	Oryza indica	71.85	5.00e-112	397.00
IUUC-Olo-080249	Oryza longistaminata	75.79	1.00e-111	396.00
IUUC-Ome-081240	Oryza meridionalis	75.53	2.00e-133	468.00
IUUC-Oni-082152	Oryza nivara	75.83	6.00e-134	469.00
IUUC-Opu-084011	Oryza punctata	74.16	4.00e-147	513.00
IUUC-Oru-084719	Oryza rufipogon	74.15	2.00e-138	484.00
IUUC-Osa-085286	Oryza sativa	73.39	2.00e-146	511.00
IUUC-Ola-086525	Oryzias latipes	38.76	5.00e-70	257.00
IUUC-Olu-087876	Ostreococcus lucimarinus	45.43	1.00e-85	309.00
IUUC-Oga-088125	Otolemur garnettii	40.75	2.00e-79	288.00
IUUC-Oar-089701	Ovis aries	41.75	3.00e-81	295.00
IUUC-Ptr-091218	Pan troglodytes	42.00	4.00e-78	284.00
IUUC-Pan-091755	Papio anubis	42.25	3.00e-78	284.00
IUUC-Psi-094061	Pelodiscus sinensis	42.00	2.00e-83	301.00
IUUC-Pma-094430	Petromyzon marinus	42.86	7.00e-58	216.00
IUUC-Pno-094900	Phaeosphaeria nodorum	29.95	2.00e-39	156.00
IUUC-Ppa-095895	Physcomitrella patens	63.31	1.00e-152	531.00
IUUC-Pfo-096297	Poecilia formosa	42.46	9.00e-57	212.00
IUUC-Pab-097717	Pongo abelii	42.25	3.00e-78	284.00
IUUC-Pop-098938	Populus trichocarpa	80.68	2.00e-176	610.00
IUUC-Pca-100389	Procavia capensis	38.75	2.00e-63	235.00
IUUC-Ppe-102045	Prunus persica	78.63	6.00e-173	599.00
IUUC-Pva-102357	Pteropus vampyrus	45.19	2.00e-35	140.00
IUUC-Pgr-103399	Puccinia graminis	40.05	6.00e-82	297.00
IUUC-Ptt-103872	Puccinia triticina	40.77	8.00e-84	303.00
IUUC-Pte-104092	Pyrenophora teres	39.10	4.00e-63	234.00
IUUC-Pyt-104669	Pyrenophora triticirepentis	39.56	8.00e-64	237.00
IUUC-Rno-105515	Rattus norvegicus	41.81	3.00e-81	294.00
IUUC-Sce-106434	Saccharomyces cerevisiae	41.67	7.00e-83	300.00
IUUC-Sha-106808	Sarcophilus harrisii	41.75	7.00e-81	293.00
IUUC-Sja-107995	Schizosaccharomyces japonicus	39.75	8.00e-76	276.00
IUUC-Spo-108044	Schizosaccharomyces pombe	39.09	3.00e-82	298.00
IUUC-Smo-109581	Selaginella moellendorffii	59.33	8.00e-139	486.00
IUUC-Sit-110704	Setaria italica	74.03	7.00e-153	532.00
IUUC-Sly-110990	Solanum lycopersicum	75.79	5.00e-139	486.00
IUUC-Stu-112542	Solanum tuberosum	74.32	3.00e-94	336.00
IUUC-Sar-113766	Sorex araneus	41.49	2.00e-66	244.00
IUUC-Sbi-114016	Sorghum bicolor	74.55	1.00e-152	531.00
IUUC-Sre-115099	Sporisorium reilianum	36.68	1.00e-78	286.00
IUUC-Ssc-115277	Sus scrofa	42.50	2.00e-75	275.00
IUUC-Tgu-117343	Taeniopygia guttata	41.87	2.00e-85	308.00
IUUC-Tru-118397	Takifugu rubripes	41.75	4.00e-82	297.00
IUUC-Tni-120272	Tetraodon nigroviridis	41.94	2.00e-82	298.00
IUUC-Tca-121514	Theobroma cacao	80.00	0.00e+00	639.00
IUUC-Tre-121990	Trichoderma reesei	38.86	1.00e-77	282.00
IUUC-Tvi-122504	Trichoderma virens	41.48	3.00e-76	278.00
IUUC-Tae-123153	Triticum aestivum	74.55	7.00e-153	532.00
IUUC-Tur-126693	Triticum urartu	76.26	3.00e-119	420.00
IUUC-Tme-127011	Tuber melanosporum	40.19	1.00e-80	292.00
IUUC-Tbe-127939	Tupaia belangeri	42.00	3.00e-77	281.00
IUUC-Ttr-128889	Tursiops truncatus	36.00	3.00e-65	241.00
IUUC-Uma-129450	Ustilago maydis	36.51	2.00e-79	289.00
IUUC-Vda-129919	Verticillium dahliae	37.98	1.00e-70	259.00
IUUC-Vvi-130928	Vitis vinifera	78.79	3.00e-179	620.00
IUUC-Xtr-131891	Xenopus tropicalis	37.66	2.00e-70	258.00
IUUC-Xma-133260	Xiphophorus maculatus	41.67	5.00e-56	209.00
IUUC-Yli-134578	Yarrowia lipolytica	41.29	2.00e-77	282.00
IUUC-Zma-135427	Zea mays	73.77	4.00e-151	526.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence