iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Vvi-131075

UUCD1 version

UUC-ViV-00742

Ensembl Protein ID

VIT_08s0007g05930.t01

UniProt Accession

F6HLM8; F6HLM8_VITVI

Genbank Protein ID

CCB55284.1

Protein Name

Putative uncharacterized protein

Genbank Nucleotide ID

FN595991

Gene Name

VIT_08s0007g05930

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VIT_08s0007g05930	VIT_08s0007g05930.t01	VIT_08s0007g05930.t01

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.50e-42	140.8	531	567
UBD/Beta-Prp	2.10e-62	211.5	365	587

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           gH  +v +++f ++  +l++G+ D+t+++WDlr+ ++
   Q: 531  GHVKPVLGICFsPNgYHLATGAEDNTCRIWDLRKKKS 567
           899*********77799***************98765 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkgheds 96
           ++ +++   fs d++lla+   +g  k+w++ + ++++ l+gh++  t+v fsp  + l+t+s Drt+++w+ + g+ + t++gh d+
   Q: 365  DDRPLSGCSFSHDGKLLAACALSGVAKIWSMPQVNKVSALKGHTERATDVAFSPALNHLATASADRTARLWNSE-GSLLKTFEGHLDR 451
           567888999**************************************************************965.889********** PP
   S: 97   vlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvy 184
           +  ++f+psg++l ++s d+t r+wd+etg++l  +++gh+++v ++++h dg+l +s++lD   r+Wdl++g+ +  l+g h ++v 
   Q: 452  LARIAFHPSGKYLGTASFDKTWRLWDVETGEELL-LQEGHSRSVYGISFHRDGSLAASCGLDALGRVWDLRSGRSILALEG-HVKPVL 537
           **********************************.*********************************************9.****** PP
   S: 185  slsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnd 234
            + f++ng +l++g++d+t ++wdl++++ ++   +h++ v++v+f p++
   Q: 538  GICFSPNGYHLATGAEDNTCRIWDLRKKKSLYVIPAHSNLVSQVKFEPQE 587
           **********************************************9876 PP

Organism

Vitis vinifera

Protein Sequence
(Fasta)

MKSDGAQIQK WKSRRRRAGK AEAATTHLGE RRSPHFSASG CARNFEWLEL RSEAAAFFKE 60
ESSAGVIGLI QLLLILSFPL LGMDVDEENP VSVSLAEPSA AVTDDQTPVS TIDPTPLPAM 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAAGTCTG ATGGAGCCCA AATTCAGAAG TGGAAATCGC GGAGGAGAAG AGCAGGGAAA 60
GCAGAAGCTG CTACTACCCA TCTTGGTGAA CGGCGATCGC CGGTAACTGC TGCGCAACTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR014906--PRP4-like
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08799--PRP4
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00500--SFM
SM00320--WD40

Gene Ontology

GO:0046540--C:U4/U6 x U5 tri-snRNP complex
GO:0030621--F:U4 snRNA binding
GO:0017070--F:U6 snRNA binding
GO:0000398--P:mRNA splicing, via spliceosome

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000771	Aegilops tauschii	66.97	3.00e-168	583.00
IUUC-Aml-001737	Ailuropoda melanoleuca	46.41	5.00e-119	420.00
IUUC-Atr-002828	Amborella trichopoda	74.79	0.00e+00	661.00
IUUC-Apl-003723	Anas platyrhynchos	46.20	4.00e-119	421.00
IUUC-Aca-004972	Anolis carolinensis	45.76	3.00e-118	417.00
IUUC-Aly-006531	Arabidopsis lyrata	68.49	5.00e-178	616.00
IUUC-Ath-007367	Arabidopsis thaliana	69.11	0.00e+00	679.00
IUUC-Ago-007893	Ashbya gossypii	32.75	2.00e-57	215.00
IUUC-Acl-008236	Aspergillus clavatus	38.66	2.00e-79	288.00
IUUC-Afl-008522	Aspergillus flavus	37.60	3.00e-82	298.00
IUUC-Afu-008904	Aspergillus fumigatus	38.74	1.00e-84	306.00
IUUC-Ani-009198	Aspergillus nidulans	38.80	5.00e-83	300.00
IUUC-Ang-009662	Aspergillus niger	40.04	4.00e-84	304.00
IUUC-Aor-009881	Aspergillus oryzae	37.99	4.00e-82	297.00
IUUC-Ate-010333	Aspergillus terreus	36.76	4.00e-77	281.00
IUUC-Ame-011697	Astyanax mexicanus	43.25	2.00e-116	411.00
IUUC-Bgr-012254	Blumeria graminis	36.29	3.00e-83	301.00
IUUC-Bta-012615	Bos taurus	46.41	2.00e-119	421.00
IUUC-Bci-013720	Botrytis cinerea	38.35	2.00e-87	315.00
IUUC-Bdi-014302	Brachypodium distachyon	68.90	0.00e+00	627.00
IUUC-Bol-015594	Brassica oleracea	71.87	0.00e+00	649.00
IUUC-Bra-017465	Brassica rapa	71.65	0.00e+00	648.00
IUUC-Cel-018632	Caenorhabditis elegans	36.00	3.00e-76	278.00
IUUC-Cja-019747	Callithrix jacchus	46.41	2.00e-119	421.00
IUUC-Cfa-020288	Canis familiaris	46.41	4.00e-119	421.00
IUUC-Cpo-021440	Cavia porcellus	46.19	2.00e-118	418.00
IUUC-Cre-022716	Chlamydomonas reinhardtii	51.40	2.00e-100	358.00
IUUC-Csa-023139	Chlorocebus sabaeus	50.61	4.00e-99	353.00
IUUC-Cho-024481	Choloepus hoffmanni	45.85	2.00e-117	414.00
IUUC-Cin-025106	Ciona intestinalis	41.74	3.00e-102	364.00
IUUC-Csv-026087	Ciona savignyi	43.26	5.00e-105	374.00
IUUC-Cgl-026538	Colletotrichum gloeosporioides	36.14	4.00e-82	298.00
IUUC-Cne-026793	Cryptococcus neoformans	39.79	2.00e-93	335.00
IUUC-Dre-028723	Danio rerio	43.21	2.00e-112	398.00
IUUC-Dno-029299	Dasypus novemcinctus	46.19	1.00e-118	419.00
IUUC-Dse-031562	Dothistroma septosporum	34.61	1.00e-79	289.00
IUUC-Dme-031783	Drosophila melanogaster	43.92	7.00e-94	337.00
IUUC-Ete-032669	Echinops telfairi	46.64	1.00e-120	426.00
IUUC-Eca-033566	Equus caballus	46.41	6.00e-119	420.00
IUUC-Eeu-034524	Erinaceus europaeus	52.14	2.00e-74	272.00
IUUC-Fca-036215	Felis catus	46.41	4.00e-119	420.00
IUUC-Fal-037018	Ficedula albicollis	45.48	3.00e-97	348.00
IUUC-Fox-037936	Fusarium oxysporum	35.74	2.00e-76	278.00
IUUC-Fso-038366	Fusarium solani	35.32	2.00e-79	288.00
IUUC-Gmo-038966	Gadus morhua	46.55	4.00e-90	323.00
IUUC-Ggr-039942	Gaeumannomyces graminis	34.37	2.00e-73	269.00
IUUC-Gga-040797	Gallus gallus	46.64	7.00e-120	423.00
IUUC-Gac-042598	Gasterosteus aculeatus	43.31	2.00e-104	371.00
IUUC-Gma-044220	Glycine max	81.55	0.00e+00	714.00
IUUC-Ggo-044682	Gorilla gorilla	46.41	7.00e-119	419.00
IUUC-Hsa-045804	Homo sapiens	46.41	3.00e-119	421.00
IUUC-Hvu-047567	Hordeum vulgare	66.51	2.00e-161	560.00
IUUC-Itr-047882	Ictidomys tridecemlineatus	46.62	9.00e-120	422.00
IUUC-Kpa-049369	Komagataella pastoris	36.29	1.00e-61	229.00
IUUC-Lch-050074	Latimeria chalumnae	42.83	3.00e-104	371.00
IUUC-Lpe-051333	Leersia perrieri	67.89	5.00e-162	563.00
IUUC-Loc-052164	Lepisosteus oculatus	43.46	4.00e-115	407.00
IUUC-Lma-053088	Leptosphaeria maculans	37.63	4.00e-76	278.00
IUUC-Laf-053460	Loxodonta africana	46.41	2.00e-119	421.00
IUUC-Mcc-055859	Macaca mulatta	46.41	4.00e-119	420.00
IUUC-Meu-056134	Macropus eugenii	46.41	1.00e-118	419.00
IUUC-Mor-057251	Magnaporthe oryzae	36.33	2.00e-81	295.00
IUUC-Mpo-057375	Magnaporthe poae	41.20	2.00e-54	204.00
IUUC-Mtr-057656	Medicago truncatula	70.84	0.00e+00	632.00
IUUC-Mla-059145	Melampsora laricipopulina	42.98	4.00e-91	327.00
IUUC-Mga-059855	Meleagris gallopavo	46.42	2.00e-119	422.00
IUUC-Mvi-060372	Microbotryum violaceum	42.29	1.00e-82	300.00
IUUC-Mmr-060826	Microcebus murinus	46.41	3.00e-119	421.00
IUUC-Mdo-062748	Monodelphis domestica	46.84	1.00e-119	422.00
IUUC-Mmu-063351	Mus musculus	46.19	4.00e-118	417.00
IUUC-Mac-064846	Musa acuminata	76.43	3.00e-179	620.00
IUUC-Mpu-066006	Mustela putorius furo	46.41	4.00e-119	420.00
IUUC-Mlu-067398	Myotis lucifugus	46.19	7.00e-119	420.00
IUUC-Nfi-068399	Neosartorya fischeri	39.15	1.00e-86	313.00
IUUC-Ncr-068711	Neurospora crassa	37.15	5.00e-85	307.00
IUUC-Nle-069982	Nomascus leucogenys	46.41	2.00e-119	421.00
IUUC-Opr-070596	Ochotona princeps	46.19	4.00e-120	424.00
IUUC-Ont-072374	Oreochromis niloticus	46.65	1.00e-108	386.00
IUUC-Oan-073166	Ornithorhynchus anatinus	49.58	2.00e-102	365.00
IUUC-Ocu-074371	Oryctolagus cuniculus	46.62	1.00e-119	422.00
IUUC-Oba-075083	Oryza barthii	67.23	1.00e-172	598.00
IUUC-Obr-076405	Oryza brachyantha	69.27	6.00e-164	569.00
IUUC-Ogl-077683	Oryza glaberrima	66.81	3.00e-171	593.00
IUUC-Ogu-078486	Oryza glumaepatula	67.17	6.00e-171	593.00
IUUC-Oin-079679	Oryza indica	67.17	7.00e-175	606.00
IUUC-Olo-080243	Oryza longistaminata	67.16	2.00e-151	527.00
IUUC-Ome-081230	Oryza meridionalis	67.17	4.00e-175	606.00
IUUC-Oni-082961	Oryza nivara	67.17	9.00e-175	605.00
IUUC-Opu-083189	Oryza punctata	67.17	3.00e-175	607.00
IUUC-Oru-084353	Oryza rufipogon	68.12	1.00e-169	588.00
IUUC-Osa-085458	Oryza sativa	67.17	4.00e-175	606.00
IUUC-Ola-086940	Oryzias latipes	45.99	4.00e-116	410.00
IUUC-Olu-087580	Ostreococcus lucimarinus	42.15	1.00e-78	285.00
IUUC-Oga-088703	Otolemur garnettii	44.54	3.00e-113	401.00
IUUC-Oar-089829	Ovis aries	46.41	1.00e-119	422.00
IUUC-Ptr-090838	Pan troglodytes	46.41	3.00e-119	421.00
IUUC-Pan-092261	Papio anubis	46.30	6.00e-118	417.00
IUUC-Psi-093020	Pelodiscus sinensis	45.53	4.00e-117	414.00
IUUC-Pno-094858	Phaeosphaeria nodorum	38.41	3.00e-78	285.00
IUUC-Ppa-095531	Physcomitrella patens	66.45	2.00e-172	597.00
IUUC-Pfo-096812	Poecilia formosa	42.17	5.00e-89	320.00
IUUC-Pab-097805	Pongo abelii	49.72	6.00e-100	357.00
IUUC-Pop-100051	Populus trichocarpa	79.96	0.00e+00	696.00
IUUC-Pca-100152	Procavia capensis	46.19	6.00e-119	420.00
IUUC-Ppe-101244	Prunus persica	81.26	0.00e+00	665.00
IUUC-Pva-102529	Pteropus vampyrus	44.66	5.00e-112	397.00
IUUC-Pgr-103550	Puccinia graminis	37.93	5.00e-95	340.00
IUUC-Ptt-103951	Puccinia triticina	36.96	1.00e-64	239.00
IUUC-Pte-104151	Pyrenophora teres	34.97	9.00e-72	263.00
IUUC-Pyt-104571	Pyrenophora triticirepentis	35.61	1.00e-72	266.00
IUUC-Rno-105747	Rattus norvegicus	46.19	3.00e-118	417.00
IUUC-Sce-106418	Saccharomyces cerevisiae	34.92	1.00e-60	226.00
IUUC-Sha-107334	Sarcophilus harrisii	46.41	1.00e-118	419.00
IUUC-Sja-107794	Schizosaccharomyces japonicus	36.55	1.00e-68	252.00
IUUC-Spo-108189	Schizosaccharomyces pombe	40.22	4.00e-86	310.00
IUUC-Ssl-108550	Sclerotinia sclerotiorum	37.13	3.00e-86	311.00
IUUC-Smo-108924	Selaginella moellendorffii	62.26	9.00e-159	552.00
IUUC-Sit-110102	Setaria italica	68.88	3.00e-176	610.00
IUUC-Sly-111668	Solanum lycopersicum	83.11	0.00e+00	696.00
IUUC-Stu-111928	Solanum tuberosum	81.58	0.00e+00	704.00
IUUC-Sar-113266	Sorex araneus	40.65	1.00e-98	352.00
IUUC-Sbi-114134	Sorghum bicolor	68.30	7.00e-178	615.00
IUUC-Sre-115114	Sporisorium reilianum	39.18	3.00e-92	331.00
IUUC-Ssc-115443	Sus scrofa	46.41	5.00e-119	420.00
IUUC-Tgu-117157	Taeniopygia guttata	46.85	1.00e-120	425.00
IUUC-Tru-118587	Takifugu rubripes	46.56	4.00e-111	394.00
IUUC-Tsy-119157	Tarsius syrichta	50.42	3.00e-106	377.00
IUUC-Tni-120427	Tetraodon nigroviridis	45.50	7.00e-110	390.00
IUUC-Tca-121368	Theobroma cacao	75.26	0.00e+00	747.00
IUUC-Tre-122074	Trichoderma reesei	35.48	7.00e-80	290.00
IUUC-Tvi-122349	Trichoderma virens	34.57	8.00e-80	290.00
IUUC-Tae-125651	Triticum aestivum	66.89	2.00e-172	597.00
IUUC-Tur-126532	Triticum urartu	67.64	2.00e-149	521.00
IUUC-Tme-126951	Tuber melanosporum	38.05	4.00e-80	291.00
IUUC-Tbe-128136	Tupaia belangeri	42.27	2.00e-103	369.00
IUUC-Ttr-129169	Tursiops truncatus	38.31	3.00e-54	205.00
IUUC-Uma-129399	Ustilago maydis	38.68	6.00e-90	323.00
IUUC-Vda-129842	Verticillium dahliae	35.91	7.00e-84	303.00
IUUC-Vpa-130440	Vicugna pacos	46.41	1.00e-119	422.00
IUUC-Xma-133002	Xiphophorus maculatus	48.63	1.00e-97	348.00
IUUC-Yli-134569	Yarrowia lipolytica	36.32	1.00e-73	269.00
IUUC-Zma-135799	Zea mays	63.10	2.00e-170	591.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence