iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007557

Ensembl Protein ID

AT5G13860.1

UniProt Accession

Q9FFY6; ELCL_ARATH

Genbank Protein ID

BAB11114.1; AED91951.1; AT5G13860.1

Protein Name

Protein ELC-like; ESCRT-I complex subunit VPS23 homolog 2; Protein VACUOLAR PROTEIN SORTING 23B; Vacuolar protein sorting-associated protein 23 homolog 2

Genbank Nucleotide ID

AB005230; CP002688; BX832522

Gene Name

ELCL; ELCHL; VPS23B; At5g13860; MAC12.18

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G13860	AT5G13860.1	AT5G13860.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/UBC-like/UBD_UEV	5.00e-53	179.6	18	162

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/UBC-like/UBD_UEV

   S: 1    AvsesslkkvpskykdkrltvrellnliesykslkpktasfvlnDgesreLlrltGtipvpergitynipiilwlletYPekPPfvsvkekidmntik 98
           A++++ ++ +p+ ++ k l++++llnli+sy sl pkta+f++nDg+s+ Ll+++Gtip+p++g++ynip+++wlle+YP+ PP+v+v+++ dm +ik
   Q: 18   ALTQRGPSALPYAENTKSLIRQHLLNLISSYTSLDPKTATFTHNDGRSVILLQADGTIPMPFQGVSYNIPVVIWLLESYPQYPPCVYVNPTRDM-IIK 114
           7999******************************************************************************************.*** PP
   S: 99   ssnehvdpnGkialpvLhkWknpasnlvelvqelivllskeppklsrp 146
           +++  v p+G+++lp+L++W +p+snlv+l ++l++++s++pp +s++
   Q: 115  RPHSNVSPSGLVSLPYLQNWIYPSSNLVDLASHLSAAFSRDPPLYSQR 162
           *********************************************996 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs). Mediates the association to the ESCRT-0 complex (By similarity).

Protein Sequence
(Fasta)

MAPPPAKMQE IHQFLSSALT QRGPSALPYA ENTKSLIRQH LLNLISSYTS LDPKTATFTH 60
NDGRSVILLQ ADGTIPMPFQ GVSYNIPVVI WLLESYPQYP PCVYVNPTRD MIIKRPHSNV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTTAGGTGCA GAATATTGGA ATTTGAAGTT CAGACTTTTT TTATTACTTT GAAGAAATTT 60
ACATTATTTT TTCAAAACTT TAGACTAAAT TGGATTAATT TCTCCCAAAC TATTCGATCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0967--Endosome
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport

Interpro

IPR017916--SB_dom
IPR016135--UBQ-conjugating_enzyme/RWD
IPR008883--UEV_N

PROSITE

PS51312--SB
PS51322--UEV

Pfam

PF05743--UEV
PF09454--Vps23_core

Gene Ontology

GO:0000813--C:ESCRT I complex
GO:0005770--C:late endosome
GO:0006464--P:cellular protein modification process
GO:0015031--P:protein transport

KEGG

ath:AT5G13860

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006084	Arabidopsis lyrata	94.29	0.00e+00	645.00
IUUC-Ago-007755	Ashbya gossypii	30.51	8.00e-08	50.80
IUUC-Bci-013881	Botrytis cinerea	37.07	6.00e-20	91.70
IUUC-Bdi-014001	Brachypodium distachyon	44.59	4.00e-77	280.00
IUUC-Bol-015933	Brassica oleracea	72.43	4.00e-143	500.00
IUUC-Bra-017442	Brassica rapa	72.39	3.00e-151	527.00
IUUC-Cne-026904	Cryptococcus neoformans	34.38	6.00e-13	68.60
IUUC-Lpe-051090	Leersia perrieri	49.08	7.00e-97	346.00
IUUC-Mvi-060463	Microbotryum violaceum	44.87	5.00e-15	75.50
IUUC-Mac-065020	Musa acuminata	53.46	2.00e-103	367.00
IUUC-Oba-075338	Oryza barthii	41.52	1.00e-64	239.00
IUUC-Ogl-077182	Oryza glaberrima	48.53	4.00e-90	324.00
IUUC-Ogu-078281	Oryza glumaepatula	49.32	2.00e-94	338.00
IUUC-Oin-079068	Oryza indica	48.52	4.00e-89	321.00
IUUC-Ome-081781	Oryza meridionalis	50.14	9.00e-94	336.00
IUUC-Oni-082517	Oryza nivara	50.14	9.00e-96	343.00
IUUC-Opu-084101	Oryza punctata	49.86	6.00e-94	336.00
IUUC-Oru-084556	Oryza rufipogon	48.05	1.00e-91	329.00
IUUC-Osa-086264	Oryza sativa	48.26	1.00e-89	322.00
IUUC-Pop-099323	Populus trichocarpa	63.97	3.00e-133	467.00
IUUC-Ptt-103826	Puccinia triticina	33.33	3.00e-15	75.90
IUUC-Sce-106262	Saccharomyces cerevisiae	31.40	1.00e-09	56.60
IUUC-Ssl-108672	Sclerotinia sclerotiorum	38.79	3.00e-20	92.80
IUUC-Smo-108973	Selaginella moellendorffii	49.86	1.00e-78	285.00
IUUC-Tca-121182	Theobroma cacao	65.94	2.00e-127	447.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence