iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099819

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000342

Gene Name

POPTRDRAFT_802150; POPTR_0006s20810g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0006s20810	POPTR_0006s20810.1	POPTR_0006s20810.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.50e-06	29.3	139	194
E3 activity/RING/RING	4.40e-06	28.2	142	183

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 5    eflCpIslelMrdPvvlpsGitydrssIekwl..asggktcPvtrqplteedlvPn 58
           ++ C I l+l +dPvv+++G+ +   ++ +wl   s+ k+cPv++ ++t ++++P 
   Q: 139  FYDCNICLDLATDPVVTCCGHLFCWPCLYQWLhvHSDAKECPVCKGEVTMKNVTPI 194
           689*****************************87777779**************97 PP

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C iCl+   d p+v+ CgH+f+  Cl++w    ++ s +  CP+C+
   Q: 142  CNICLDLATD-PVVTCCGHLFCWPCLYQW---LHVHSDAKECPVCK 183
           99******99.999***************...556899999****7 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MGEATSDTMN LDLNLGPGPE AGSELEASNE AMNLDDWVDD PIMRIREAVR IGAREAREHR 60
RWRQFQVPQQ TQSLSVELNQ LMANSGHVGT LQAGEGSVAA EERTNEVPKM CENNNGFLED 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACATACAATC CTTCTTCCTC TCTCTCTCTT TGAAGACTTT AACACGATTT CACAACTCAC 60
ACGCTCGCTC TCTATCTGAG TAGATGAGAA TTTACTAATC GAGATGAGGG AAACAACAGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00097--zf-C3HC4

SMART

SM00184--RING

Gene Ontology

GO:0036513--C:Derlin-1 retrotranslocation complex
GO:1904264--F:ubiquitin protein ligase activity involved in ERAD pathway
GO:0044390--F:ubiquitin-like protein conjugating enzyme binding
GO:0008270--F:zinc ion binding
GO:0071712--P:ER-associated misfolded protein catabolic process
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0006s20810g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000500	Aegilops tauschii	61.00	9.00e-36	143.00
IUUC-Aly-006126	Arabidopsis lyrata	54.90	2.00e-108	385.00
IUUC-Ath-007143	Arabidopsis thaliana	54.66	3.00e-108	384.00
IUUC-Bdi-014503	Brachypodium distachyon	53.44	1.00e-35	143.00
IUUC-Bol-015310	Brassica oleracea	52.70	1.00e-103	369.00
IUUC-Bra-017049	Brassica rapa	52.45	9.00e-104	369.00
IUUC-Csv-026190	Ciona savignyi	44.07	6.00e-09	54.30
IUUC-Gma-042913	Glycine max	62.33	3.00e-128	451.00
IUUC-Hvu-047679	Hordeum vulgare	60.75	9.00e-37	146.00
IUUC-Lpe-051486	Leersia perrieri	46.71	7.00e-35	141.00
IUUC-Mtr-057874	Medicago truncatula	55.48	6.00e-119	420.00
IUUC-Mvi-060316	Microbotryum violaceum	50.85	1.00e-13	69.30
IUUC-Mac-064666	Musa acuminata	51.45	2.00e-35	143.00
IUUC-Obr-076527	Oryza brachyantha	61.00	7.00e-35	140.00
IUUC-Ogu-078102	Oryza glumaepatula	44.94	4.00e-35	142.00
IUUC-Oin-079384	Oryza indica	44.94	3.00e-35	142.00
IUUC-Olo-080296	Oryza longistaminata	55.65	1.00e-33	136.00
IUUC-Ome-081574	Oryza meridionalis	55.46	9.00e-35	140.00
IUUC-Oni-082269	Oryza nivara	61.00	5.00e-35	142.00
IUUC-Opu-083935	Oryza punctata	43.58	8.00e-35	140.00
IUUC-Oru-084846	Oryza rufipogon	44.94	3.00e-35	142.00
IUUC-Osa-085750	Oryza sativa	44.94	3.00e-35	142.00
IUUC-Ppe-101193	Prunus persica	67.23	4.00e-118	417.00
IUUC-Smo-109079	Selaginella moellendorffii	50.40	2.00e-28	120.00
IUUC-Sbi-114164	Sorghum bicolor	31.46	1.00e-36	147.00
IUUC-Tca-121427	Theobroma cacao	63.05	4.00e-127	447.00
IUUC-Tae-124610	Triticum aestivum	61.00	1.00e-35	143.00
IUUC-Tur-126391	Triticum urartu	60.00	2.00e-34	139.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence