iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ppa-095489

Ensembl Protein ID

PP1S255_25V6.1

UniProt Accession

A9TKZ9; A9TKZ9_PHYPA

Genbank Protein ID

EDQ55903.1

Protein Name

Transcription initiation factor TFIID, subunit TAF1

Genbank Nucleotide ID

DS545144

Gene Name

HAF1502; PHYPADRAFT_94126

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PP1S255_25V6	PP1S255_25V6.1	PP1S255_25V6.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UBQ/UBQ_Other	1.90e-08	34.8	724	798

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UBQ/UBQ_Other

   S: 1    vqvtvksldgseltlkvnpsdtVaeLKekiekklg.ip.peqqrLiykGkiLeddktLadyglkdgstihllekk 73
           ++v+vk+l g+  +l v+ s+t  +LK k  kklg +  +e+ ++ y+Gk+L d+ t+a+  ++++s++hl+++k
   Q: 724  MKVIVKTLGGKGSKLTVDASETLDVLKAKAAKKLGdLKpSEKTKIFYSGKELVDGYTFAQQQVPPNSVLHLVRTK 798
           799********889****************99966366688*******************************986 PP

Organism

Physcomitrella patens

Protein Sequence
(Fasta)

MTAIDTVGLE FGSLMGDIYK EVSGKGYDEE EEEEDGDGEG EGRGQQMLGF MFGNVDDSGG 60
LDEEYLDQDA KEHLSALAHQ LGPSLVDIEQ LYAKRKELTD VSEGEELEDY DQKADDAVDY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGACTGCCA TTGATACTGT AGGGCTTGAA TTTGGGAGCC TTATGGGGGA TATATATAAA 60
GAAGTCAGTG GAAAGGGCTA CGATGAGGAG GAAGAGGAGG AAGATGGAGA CGGAGAGGGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0103--Bromodomain
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome

Interpro

IPR001487--Bromodomain
IPR018359--Bromodomain_CS
IPR009067--TAF_II_230-bd
IPR022591--TFIID_sub1_DUF3591
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom

PROSITE

PS00633--BROMODOMAIN_1
PS50014--BROMODOMAIN_2
PS50053--UBIQUITIN_2

Pfam

PF00439--Bromodomain
PF12157--DUF3591
PF00240--ubiquitin

PRINTS

PR00503--BROMODOMAIN

SMART

SM00297--BROMO
SM00213--UBQ

Gene Ontology

GO:0005669--C:transcription factor TFIID complex
GO:0004402--F:histone acetyltransferase activity
GO:0001129--F:RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly
GO:0043565--F:sequence-specific DNA binding
GO:0017025--F:TBP-class protein binding
GO:0003743--F:translation initiation factor activity
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter

KEGG

ppp:PHYPADRAFT_94126

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003084	Amborella trichopoda	62.42	0.00e+00	1155.00
IUUC-Aly-005900	Arabidopsis lyrata	46.91	0.00e+00	820.00
IUUC-Gma-043047	Glycine max	48.79	0.00e+00	1033.00
IUUC-Lpe-051566	Leersia perrieri	52.23	0.00e+00	922.00
IUUC-Mpo-057370	Magnaporthe poae	40.00	1.00e-11	65.10
IUUC-Oba-075663	Oryza barthii	47.35	0.00e+00	951.00
IUUC-Obr-076214	Oryza brachyantha	53.33	0.00e+00	974.00
IUUC-Ogl-077575	Oryza glaberrima	47.28	0.00e+00	950.00
IUUC-Ogu-079017	Oryza glumaepatula	47.42	0.00e+00	941.00
IUUC-Oin-079864	Oryza indica	48.24	0.00e+00	950.00
IUUC-Olo-080777	Oryza longistaminata	47.65	0.00e+00	945.00
IUUC-Ome-081474	Oryza meridionalis	48.16	0.00e+00	952.00
IUUC-Oni-082068	Oryza nivara	48.47	0.00e+00	956.00
IUUC-Opu-083274	Oryza punctata	47.19	0.00e+00	939.00
IUUC-Oru-085067	Oryza rufipogon	48.24	0.00e+00	951.00
IUUC-Pop-098790	Populus trichocarpa	49.49	0.00e+00	971.00
IUUC-Ppe-101917	Prunus persica	46.75	0.00e+00	939.00
IUUC-Smo-109033	Selaginella moellendorffii	59.34	0.00e+00	1093.00
IUUC-Sit-110106	Setaria italica	46.49	0.00e+00	831.00
IUUC-Sly-111896	Solanum lycopersicum	53.07	0.00e+00	972.00
IUUC-Tca-121471	Theobroma cacao	47.59	0.00e+00	929.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence